1 HAMP#1
66-132 aa · 67 aa · 18.3% of protein
Raw token
HAMP:66:0.00000365:132:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN190_RS08300
Histidine kinase, Classic
Clostridioides difficile T14 · GCF_000531295
ClassHKTypeClassicLength367 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000531295#BN190_RS08300Stable P2CS identifier used across views.
GenomeGCF_000531295Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length367 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 367 aa (65.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa367 aa
Domain-by-domain annotation3 items
2 HisKA#2
145-212 aa · 68 aa · 18.5% of protein
Raw token
HisKA:145:0.0000000000000439:212:68:643 HATPase_c#3
259-365 aa · 107 aa · 29.2% of protein
Raw token
HATPase_c:259:5.02e-27:365:108:109- Raw architecture: HAMP:66:0.00000365:132:69:69#HisKA:145:0.0000000000000439:212:68:64#HATPase_c:259:5.02e-27:365:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000531295::NZ_HF927136.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1106Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN190_2180001RefSeq proteinWP_044496115.1
Context group ID
GCF_000531295::NZ_HF927136.1::G00027Context members
BN190_RS08300
Partner locus tags
BN190_RS08300
Partner old locus tags
BN190_2180001
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044496115.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN190_RS08300Primary locus identifier stored in the genes table.
Old locus tagBN190_2180001Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF927136.1Sequence record reported by the local genomic context database.
Genomic interval1-1 106 nt1 106 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 106 ntGCF_000531295::NZ_HF927136.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000531295::NZ_HF927136.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF927136.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 106 nt1 106 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 106 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BN190_RS08300GCF_000531295#BN190_RS08300
HKClassicCurrent focus
1-1 106 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS03855Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747926
Simplified PFAM architecture for HKOC_1747926
PFAM domain coverage: 172 / 467 aa (36.8%)
1 aa467 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-309] | HATPase_c[359-465]
- Domain count: 2
- Matched identifier: HKOC_1747926
- Positioned domains: HisKA 245-309 ; HATPase_c 359-465
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS03855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 085 · GCF_000531295
AssemblyT14 · Scaffoldhaploid
Genome composition3 988 952 bp · 28,5% GCClostridioides difficile T14
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key