1 Response_reg#1
3-112 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:3:1.81e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KEW_RS0100035
Response regulator OmpR family
Escherichia coli O145:H28 str. 4865/96 · GCF_000234315
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000234315#KEW_RS0100035Stable P2CS identifier used across views.
GenomeGCF_000234315Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 223 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-218 aa · 73 aa · 32.7% of protein
Raw token
Trans_reg_C:146:4.82e-30:218:74:77- Raw architecture: Response_reg:3:1.81e-32:112:111:111#Trans_reg_C:146:4.82e-30:218:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000234315::NZ_AGTL01000001.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5546-7575Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000234315::NZ_AGTL01000001.1::G00039Context members
KEW_RS0100035KEW_RS0100040
Partner locus tags
KEW_RS0100035KEW_RS0100040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_024221659.1Primary protein accession used for annex mappings.
UniProt accessionA0A0F3U3Z4Primary UniProt accession resolved in the annex database.
UniProt IDA0A0F3U3Z4_ECOLXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKEW_RS0100035Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AGTL01000001.1Sequence record reported by the local genomic context database.
Genomic interval5 546-6 217 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 546-7 575 ntGCF_000234315::NZ_AGTL01000001.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000234315::NZ_AGTL01000001.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AGTL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span5 546-7 575 nt2 030 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 546 nt7 575 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KEW_RS0100035GCF_000234315#KEW_RS0100035
RROmpRCurrent focus
5 546-6 217 nt · Forward (+)
KEW_RS0100040GCF_000234315#KEW_RS0100040
HKClassic
6 217-7 575 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000234315#KEW_RS0100035The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588043
Simplified PFAM architecture for RROC_1588043
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[146-218]
- Domain count: 2
- Matched identifier: RROC_1588043
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 146-218 ; Trans_reg_C 146-218
Cluster members and taxonomy
Representative gene: GCF_000234315#KEW_RS0100035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 078 035 · GCF_000234315
AssemblyASM23431v2 · Contighaploid
Genome composition5 225 904 bp · 50,5% GCEscherichia coli O145:H28 str. 4865/96
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key