1 Response_reg#1
6-115 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:6:2.58e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KES_RS0107225
Response regulator OmpR family
Escherichia coli O121:H19 str. MT#2 · GCF_000234275
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000234275#KES_RS0107225Stable P2CS identifier used across views.
GenomeGCF_000234275Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 238 aa (78.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.4% of protein
Raw token
Trans_reg_C:156:1.26e-21:232:77:77- Raw architecture: Response_reg:6:2.58e-34:115:111:111#Trans_reg_C:156:1.26e-21:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000234275::NZ_AGTJ01000020.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span155401-156117Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000234275::NZ_AGTJ01000020.1::G00026Context members
KES_RS0107225
Partner locus tags
KES_RS0107225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001194358.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0KTG2Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0KTG2_ECOLXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKES_RS0107225Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AGTJ01000020.1Sequence record reported by the local genomic context database.
Genomic interval155 401-156 117 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span155 401-156 117 ntGCF_000234275::NZ_AGTJ01000020.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000234275::NZ_AGTJ01000020.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AGTJ01000020.1All displayed genes belong to this local TCS context.
Neighborhood span155 401-156 117 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
155 401 nt156 117 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KES_RS0107225GCF_000234275#KES_RS0107225
RROmpRCurrent focus
155 401-156 117 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932200
Simplified PFAM architecture for RROC_0932200
PFAM domain coverage: 185 / 238 aa (77.7%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_0932200
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000005845#b4401
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 078 031 · GCF_000234275
AssemblyASM23427v3 · Contighaploid
Genome composition5 250 833 bp · 50,5% GCEscherichia coli O121:H19 str. MT#2
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key