1 Response_reg#1
5-117 aa · 113 aa · 22.4% of protein
Raw token
Response_reg:5:7.93e-27:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9469_RS00700
Response regulator, unclassified
[Clostridium] citroniae WAL-17108 · GCF_000233455
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000233455#HMPREF9469_RS00700Stable P2CS identifier used across views.
GenomeGCF_000233455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Enterocloster
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 505 aa (29.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
463-496 aa · 34 aa · 6.7% of protein
Raw token
HTH_AraC:463:0.0000000241:496:34:42- Raw architecture: Response_reg:5:7.93e-27:117:113:111#HTH_AraC:463:0.0000000241:496:34:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000233455::NZ_JH376420.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span157272-160572Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9469_00142RefSeq proteinWP_007858133.1
Context group ID
GCF_000233455::NZ_JH376420.1::G00005Context members
HMPREF9469_RS00695HMPREF9469_RS00700
Partner locus tags
HMPREF9469_RS00695HMPREF9469_RS00700
Partner old locus tags
HMPREF9469_00141HMPREF9469_00142
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007858133.1Primary protein accession used for annex mappings.
UniProt accessionG5HC30Primary UniProt accession resolved in the annex database.
UniProt IDG5HC30_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9469_RS00700Primary locus identifier stored in the genes table.
Old locus tagHMPREF9469_00142Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH376420.1Sequence record reported by the local genomic context database.
Genomic interval159 055-160 572 nt1 518 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span157 272-160 572 ntGCF_000233455::NZ_JH376420.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000233455::NZ_JH376420.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH376420.1All displayed genes belong to this local TCS context.
Neighborhood span157 272-160 572 nt3 301 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 272 nt160 572 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9469_RS00695GCF_000233455#HMPREF9469_RS00695
HKClassic
157 272-159 080 nt · Forward (+)
HMPREF9469_RS00700GCF_000233455#HMPREF9469_RS00700
RRunclassifiedCurrent focus
159 055-160 572 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000233455#HMPREF9469_RS00700The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0152276
Simplified PFAM architecture for RROC_0152276
PFAM domain coverage: 189 / 505 aa (37.4%)
1 aa505 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[420-496]
- Domain count: 2
- Matched identifier: RROC_0152276
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 420-496 ; HTH_18 420-496
Cluster members and taxonomy
Representative gene: GCF_000233455#HMPREF9469_RS00700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 733 · GCF_000233455
AssemblyClos_citr_WAL_17108_V1 · Scaffoldhaploid
Genome composition6 647 380 bp · 49,0% GC[Clostridium] citroniae WAL-17108
Signal transduction countsGenes 177 · HK 92 · RR 82CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEnterocloster
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Enterocloster
Related genes
Preview from the same derived genome key