1 Response_reg#1
13-122 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:13:6.04e-30:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECSTECEH250_RS11960
Response regulator OmpR family
Escherichia coli STEC_EH250 · GCF_000225145
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000225145#ECSTECEH250_RS11960Stable P2CS identifier used across views.
GenomeGCF_000225145Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 240 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.1% of protein
Raw token
Trans_reg_C:156:1.15e-27:232:77:77- Raw architecture: Response_reg:13:6.04e-30:122:111:111#Trans_reg_C:156:1.15e-27:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000225145::NZ_AFDW01000022.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span406303-408425Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECSTECEH250_2581RefSeq proteinWP_000137874.1
Context group ID
GCF_000225145::NZ_AFDW01000022.1::G00025Context members
ECSTECEH250_RS11965ECSTECEH250_RS11960
Partner locus tags
ECSTECEH250_RS11965ECSTECEH250_RS11960
Partner old locus tags
ECSTECEH250_2580ECSTECEH250_2581
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000137874.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7FU53Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7FU53_ECOLXDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECSTECEH250_RS11960Primary locus identifier stored in the genes table.
Old locus tagECSTECEH250_2581Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AFDW01000022.1Sequence record reported by the local genomic context database.
Genomic interval407 703-408 425 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span406 303-408 425 ntGCF_000225145::NZ_AFDW01000022.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000225145::NZ_AFDW01000022.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AFDW01000022.1All displayed genes belong to this local TCS context.
Neighborhood span406 303-408 425 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
406 303 nt408 425 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECSTECEH250_RS11965GCF_000225145#ECSTECEH250_RS11965
HKClassic
406 303-407 706 nt · Forward (+)
ECSTECEH250_RS11960GCF_000225145#ECSTECEH250_RS11960
RROmpRCurrent focus
407 703-408 425 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000184765#EC3431_RS15515Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882365
Simplified PFAM architecture for RROC_0882365
PFAM domain coverage: 186 / 240 aa (77.5%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0882365
- Positioned domains: Response_reg 13-122 ; Response_reg 13-122 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000184765#EC3431_RS15515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 754 087 · GCF_000225145
AssemblyASM22514v2 · Contighaploid
Genome composition5 211 768 bp · 51,0% GCEscherichia coli STEC_EH250
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key