1 HisKA#1
244-306 aa · 63 aa · 13.5% of protein
Raw token
HisKA:244:0.000000000000628:306:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IAM_RS03095
Histidine kinase, Classic
Escherichia coli XH001 · GCF_000224395
ClassHKTypeClassicLength465 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000224395#IAM_RS03095Stable P2CS identifier used across views.
GenomeGCF_000224395Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length465 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 465 aa (36.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa465 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
352-458 aa · 107 aa · 23.0% of protein
Raw token
HATPase_c:352:7.48e-34:458:110:109- Raw architecture: HisKA:244:0.000000000000628:306:63:64#HATPase_c:352:7.48e-34:458:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000224395::NZ_AFYG01000042.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24848-27567Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIAM_20089RefSeq proteinWP_001211893.1
Context group ID
GCF_000224395::NZ_AFYG01000042.1::G00002Context members
IAM_RS03095IAM_RS03090
Partner locus tags
IAM_RS03095IAM_RS03090
Partner old locus tags
IAM_20089IAM_20094
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001211893.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIAM_RS03095Primary locus identifier stored in the genes table.
Old locus tagIAM_20089Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AFYG01000042.1Sequence record reported by the local genomic context database.
Genomic interval24 848-26 245 nt1 398 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 848-27 567 ntGCF_000224395::NZ_AFYG01000042.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000224395::NZ_AFYG01000042.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AFYG01000042.1All displayed genes belong to this local TCS context.
Neighborhood span24 848-27 567 nt2 720 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 848 nt27 567 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IAM_RS03095GCF_000224395#IAM_RS03095
HKClassicCurrent focus
24 848-26 245 nt · Forward (+)
IAM_RS03090GCF_000224395#IAM_RS03090
RRNtrC
26 242-27 567 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000224395#IAM_RS03095The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1773087
Simplified PFAM architecture for HKOC_1773087
PFAM domain coverage: 168 / 465 aa (36.1%)
1 aa465 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-307] | HATPase_c[353-457]
- Domain count: 2
- Matched identifier: HKOC_1773087
- Positioned domains: HisKA 245-307 ; HATPase_c 353-457
Cluster members and taxonomy
Representative gene: GCF_000224395#IAM_RS03095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 069 495 · GCF_000224395
AssemblyASM22439v2 · Contighaploid
Genome composition4 839 280 bp · 50,5% GCEscherichia coli XH001
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key