1 HisKA_3#1
212-275 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:212:0.00000000000000221:275:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9228_RS04815
Histidine kinase, Classic
Bifidobacterium breve ACS-071-V-Sch8b · GCF_000213865
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000213865#HMPREF9228_RS04815Stable P2CS identifier used across views.
GenomeGCF_000213865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 448 aa (40.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
322-440 aa · 119 aa · 26.6% of protein
Raw token
HATPase_c:322:0.000000000849:440:120:109- Raw architecture: HisKA_3:212:0.00000000000000221:275:64:68#HATPase_c:322:0.000000000849:440:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000213865::NC_017218.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1143943-1145939Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9228_0999RefSeq proteinWP_014483829.1
Context group ID
GCF_000213865::NC_017218.1::G00008Context members
HMPREF9228_RS04815HMPREF9228_RS04820
Partner locus tags
HMPREF9228_RS04815HMPREF9228_RS04820
Partner old locus tags
HMPREF9228_0999HMPREF9228_1000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_014483829.1Primary protein accession used for annex mappings.
UniProt accessionA0A0L7D3V3Primary UniProt accession resolved in the annex database.
UniProt IDA0A0L7D3V3_BIFBRDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9228_RS04815Primary locus identifier stored in the genes table.
Old locus tagHMPREF9228_0999Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017218.1Sequence record reported by the local genomic context database.
Genomic interval1 143 943-1 145 289 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 143 943-1 145 939 ntGCF_000213865::NC_017218.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000213865::NC_017218.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017218.1All displayed genes belong to this local TCS context.
Neighborhood span1 143 943-1 145 939 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 143 943 nt1 145 939 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9228_RS04815GCF_000213865#HMPREF9228_RS04815
HKClassicCurrent focus
1 143 943-1 145 289 nt · Forward (+)
HMPREF9228_RS04820GCF_000213865#HMPREF9228_RS04820
RRNarL
1 145 286-1 145 939 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000213865#HMPREF9228_RS04815The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1987881
Simplified PFAM architecture for HKOC_1987881
PFAM domain coverage: 66 / 448 aa (14.7%)
1 aa448 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[212-277]
- Domain count: 1
- Matched identifier: HKOC_1987881
- Positioned domains: HisKA_3 212-277
Cluster members and taxonomy
Representative gene: GCF_000213865#HMPREF9228_RS04815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 866 777 · GCF_000213865
AssemblyASM21386v1 · Complete Genomehaploid
Genome composition2 327 492 bp · 58,5% GCBifidobacterium breve ACS-071-V-Sch8b
Signal transduction countsGenes 26 · HK 10 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key