1 Response_reg#1
15-117 aa · 103 aa · 46.2% of protein
Raw token
Response_reg:15:0.000000000034:117:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9228_RS00255
Response regulator NarL family
Bifidobacterium breve ACS-071-V-Sch8b · GCF_000213865
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000213865#HMPREF9228_RS00255Stable P2CS identifier used across views.
GenomeGCF_000213865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 223 aa (70.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-214 aa · 55 aa · 24.7% of protein
Raw token
HTH_LUXR:160:4.59e-16:214:55:58- Raw architecture: Response_reg:15:0.000000000034:117:103:111#HTH_LUXR:160:4.59e-16:214:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000213865::NC_017218.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span66500-67171Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9228_0052RefSeq proteinWP_016462032.1
Context group ID
GCF_000213865::NC_017218.1::G00001Context members
HMPREF9228_RS00255
Partner locus tags
HMPREF9228_RS00255
Partner old locus tags
HMPREF9228_0052
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016462032.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN1M2S9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN1M2S9_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9228_RS00255Primary locus identifier stored in the genes table.
Old locus tagHMPREF9228_0052Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017218.1Sequence record reported by the local genomic context database.
Genomic interval66 500-67 171 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66 500-67 171 ntGCF_000213865::NC_017218.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000213865::NC_017218.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017218.1All displayed genes belong to this local TCS context.
Neighborhood span66 500-67 171 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 500 nt67 171 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9228_RS00255GCF_000213865#HMPREF9228_RS00255
RRNarLCurrent focus
66 500-67 171 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000213865#HMPREF9228_RS00255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587895
Simplified PFAM architecture for RROC_1587895
PFAM domain coverage: 159 / 223 aa (71.3%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[15-120] | GerE[162-214]
- Domain count: 2
- Matched identifier: RROC_1587895
- Positioned domains: Response_reg 15-120 ; Response_reg 15-120 ; GerE 162-214 ; GerE 162-214
Cluster members and taxonomy
Representative gene: GCF_000213865#HMPREF9228_RS00255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 866 777 · GCF_000213865
AssemblyASM21386v1 · Complete Genomehaploid
Genome composition2 327 492 bp · 58,5% GCBifidobacterium breve ACS-071-V-Sch8b
Signal transduction countsGenes 26 · HK 10 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key