1 Response_reg#1
45-116 aa · 72 aa · 24.1% of protein
Raw token
Response_reg:45:0.0000018:116:76:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDBI1_RS20255
Response regulator, unclassified
Clostridioides difficile BI1 · GCF_000211235
ClassRRTypeunclassifiedLength299 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000211235#CDBI1_RS20255Stable P2CS identifier used across views.
GenomeGCF_000211235Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage72 / 299 aa (24.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa299 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:45:0.0000018:116:76:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000211235::NC_017177.1::G00060
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span257822-258721Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDBI1_19993RefSeq proteinWP_014466347.1
Context group ID
GCF_000211235::NC_017177.1::G00060Context members
CDBI1_RS20255
Partner locus tags
CDBI1_RS20255
Partner old locus tags
CDBI1_19993
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_014466347.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDBI1_RS20255Primary locus identifier stored in the genes table.
Old locus tagCDBI1_19993Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017177.1Sequence record reported by the local genomic context database.
Genomic interval257 822-258 721 nt900 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span257 822-258 721 ntGCF_000211235::NC_017177.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000211235::NC_017177.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017177.1All displayed genes belong to this local TCS context.
Neighborhood span257 822-258 721 nt900 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
257 822 nt258 721 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDBI1_RS20255GCF_000211235#CDBI1_RS20255
RRunclassifiedCurrent focus
257 822-258 721 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000211235#CDBI1_RS20255The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_0574514
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_000211235#CDBI1_RS20255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 699 034 · GCF_000211235
AssemblyASM21123v1 · Complete Genomehaploid
Genome composition4 464 700 bp · 28,5% GCClostridioides difficile BI1
Signal transduction countsGenes 105 · HK 49 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key