1 Response_reg#1
2-114 aa · 113 aa · 50.4% of protein
Raw token
Response_reg:2:1.82e-32:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RTO_RS10860
Response regulator OmpR family
[Ruminococcus] torques L2-14 · GCF_000210035
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210035#RTO_RS10860Stable P2CS identifier used across views.
GenomeGCF_000210035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:147:3.97e-35:220:77:77- Raw architecture: Response_reg:2:1.82e-32:114:113:111#Trans_reg_C:147:3.97e-35:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210035::NC_021015.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2353820-2355838Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRTO_22740RefSeq proteinWP_015529355.1
Context group ID
GCF_000210035::NC_021015.1::G00028Context members
RTO_RS10860RTO_RS10865
Partner locus tags
RTO_RS10860RTO_RS10865
Partner old locus tags
RTO_22740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015529355.1Primary protein accession used for annex mappings.
UniProt accessionD4M6B3Primary UniProt accession resolved in the annex database.
UniProt IDD4M6B3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRTO_RS10860Primary locus identifier stored in the genes table.
Old locus tagRTO_22740Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021015.1Sequence record reported by the local genomic context database.
Genomic interval2 353 820-2 354 494 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 353 820-2 355 838 ntGCF_000210035::NC_021015.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210035::NC_021015.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021015.1All displayed genes belong to this local TCS context.
Neighborhood span2 353 820-2 355 838 nt2 019 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 353 820 nt2 355 838 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RTO_RS10860GCF_000210035#RTO_RS10860
RROmpRCurrent focus
2 353 820-2 354 494 nt · Forward (+)
RTO_RS10865GCF_000210035#RTO_RS10865
HKClassic
2 354 519-2 355 838 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210035#RTO_RS10860The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529662
Simplified PFAM architecture for RROC_1529662
PFAM domain coverage: 187 / 224 aa (83.5%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-114] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1529662
- Positioned domains: Response_reg 2-114 ; Response_reg 2-114 ; Trans_reg_C 147-220 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_000210035#RTO_RS10860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 313 · GCF_000210035
AssemblyASM21003v1 · Chromosomehaploid
Genome composition3 341 681 bp · 41,0% GC[Ruminococcus] torques L2-14
Signal transduction countsGenes 63 · HK 30 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key