1 HisKA#1
131-192 aa · 62 aa · 18.5% of protein
Raw token
HisKA:131:0.00000000000343:192:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUR_RS00100
Histidine kinase, Classic
Agathobacter rectalis DSM 17629 · GCF_000209935
ClassHKTypeClassicLength336 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209935#EUR_RS00100Stable P2CS identifier used across views.
GenomeGCF_000209935Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length336 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage148 / 336 aa (44.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa336 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
249-334 aa · 86 aa · 25.6% of protein
Raw token
HATPase_c:249:0.000028:334:105:109- Raw architecture: HisKA:131:0.00000000000343:192:62:64#HATPase_c:249:0.000028:334:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209935::NC_021010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20466-22340Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000209935::NC_021010.1::G00001Context members
EUR_RS00095EUR_RS00100
Partner locus tags
EUR_RS00095EUR_RS00100
Partner old locus tags
EUR_00200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_307005804.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUR_RS00100Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_021010.1Sequence record reported by the local genomic context database.
Genomic interval21 330-22 340 nt1 011 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 466-22 340 ntGCF_000209935::NC_021010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209935::NC_021010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021010.1All displayed genes belong to this local TCS context.
Neighborhood span20 466-22 340 nt1 875 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 466 nt22 340 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUR_RS00095GCF_000209935#EUR_RS00095
RROmpR
20 466-21 161 nt · Forward (+)
EUR_RS00100GCF_000209935#EUR_RS00100
HKClassicCurrent focus
21 330-22 340 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209935#EUR_RS00100The current gene is the representative for this cluster.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2846379
Simplified PFAM architecture for HKOC_2846379
PFAM domain coverage: 61 / 336 aa (18.2%)
1 aa336 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[132-192]
- Domain count: 1
- Matched identifier: HKOC_2846379
- Positioned domains: HisKA 132-192
Cluster members and taxonomy
Representative gene: GCF_000209935#EUR_RS00100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 318 · GCF_000209935
AssemblyASM20993v1 · Chromosomehaploid
Genome composition3 344 951 bp · 41,5% GCAgathobacter rectalis DSM 17629
Signal transduction countsGenes 79 · HK 33 · RR 44CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key