1 HAMP#1
140-207 aa · 68 aa · 15.7% of protein
Raw token
HAMP:140:0.0000000339:207:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECB41_RS16785
Histidine kinase, Classic
Escherichia coli B41 · GCF_000194705
ClassHKTypeClassicLength433 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000194705#ECB41_RS16785Stable P2CS identifier used across views.
GenomeGCF_000194705Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length433 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 433 aa (54.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa433 aa
Domain-by-domain annotation3 items
2 HisKA#2
211-269 aa · 59 aa · 13.6% of protein
Raw token
HisKA:211:0.000000000313:269:62:643 HATPase_c#3
316-423 aa · 108 aa · 24.9% of protein
Raw token
HATPase_c:316:1.8e-29:423:109:109- Raw architecture: HAMP:140:0.0000000339:207:72:69#HisKA:211:0.000000000313:269:62:64#HATPase_c:316:1.8e-29:423:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000194705::NZ_AFAH02000003.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span187682-189706Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECB41_1791RefSeq proteinWP_000732512.1
Context group ID
GCF_000194705::NZ_AFAH02000003.1::G00011Context members
ECB41_RS16790ECB41_RS16785
Partner locus tags
ECB41_RS16790ECB41_RS16785
Partner old locus tags
ECB41_1790ECB41_1791
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000732512.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7FMH3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7FMH3_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECB41_RS16785Primary locus identifier stored in the genes table.
Old locus tagECB41_1791Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AFAH02000003.1Sequence record reported by the local genomic context database.
Genomic interval188 405-189 706 nt1 302 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span187 682-189 706 ntGCF_000194705::NZ_AFAH02000003.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000194705::NZ_AFAH02000003.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AFAH02000003.1All displayed genes belong to this local TCS context.
Neighborhood span187 682-189 706 nt2 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
187 682 nt189 706 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECB41_RS16790GCF_000194705#ECB41_RS16790
RROmpR
187 682-188 401 nt · Forward (+)
ECB41_RS16785GCF_000194705#ECB41_RS16785
HKClassicCurrent focus
188 405-189 706 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009794485#GQL87_RS04345Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2003029
Simplified PFAM architecture for HKOC_2003029
PFAM domain coverage: 209 / 447 aa (46.8%)
1 aa447 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[163-206] | HisKA[212-270] | HATPase_c[318-423]
- Domain count: 3
- Matched identifier: HKOC_2003029
- Positioned domains: HAMP 163-206 ; HisKA 212-270 ; HATPase_c 318-423
Cluster members and taxonomy
Representative gene: GCF_009794485#GQL87_RS04345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 869 694 · GCF_000194705
AssemblyASM19470v2 · Contighaploid
Genome composition5 011 605 bp · 50,5% GCEscherichia coli B41
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key