1 HAMP#1
140-207 aa · 68 aa · 15.7% of protein
Raw token
HAMP:140:0.0000000805:207:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EC50959_RS03440
Histidine kinase, Classic
Escherichia coli 5.0959 · GCF_000194395
ClassHKTypeClassicLength433 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000194395#EC50959_RS03440Stable P2CS identifier used across views.
GenomeGCF_000194395Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length433 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 433 aa (54.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa433 aa
Domain-by-domain annotation3 items
2 HisKA#2
211-269 aa · 59 aa · 13.6% of protein
Raw token
HisKA:211:0.000000000343:269:62:643 HATPase_c#3
316-423 aa · 108 aa · 24.9% of protein
Raw token
HATPase_c:316:1.91e-29:423:109:109- Raw architecture: HAMP:140:0.0000000805:207:72:69#HisKA:211:0.000000000343:269:62:64#HATPase_c:316:1.91e-29:423:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000194395::NZ_AEZX02000014.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1184995-1187019Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEC50959_4790RefSeq proteinWP_000732497.1
Context group ID
GCF_000194395::NZ_AEZX02000014.1::G00019Context members
EC50959_RS03440EC50959_RS03435
Partner locus tags
EC50959_RS03440EC50959_RS03435
Partner old locus tags
EC50959_4790EC50959_4791
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000732497.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0KWC0Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0KWC0_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEC50959_RS03440Primary locus identifier stored in the genes table.
Old locus tagEC50959_4790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AEZX02000014.1Sequence record reported by the local genomic context database.
Genomic interval1 184 995-1 186 296 nt1 302 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 184 995-1 187 019 ntGCF_000194395::NZ_AEZX02000014.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000194395::NZ_AEZX02000014.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AEZX02000014.1All displayed genes belong to this local TCS context.
Neighborhood span1 184 995-1 187 019 nt2 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 184 995 nt1 187 019 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EC50959_RS03440GCF_000194395#EC50959_RS03440
HKClassicCurrent focus
1 184 995-1 186 296 nt · Reverse (-)
EC50959_RS03435GCF_000194395#EC50959_RS03435
RROmpR
1 186 300-1 187 019 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009909855#FNZ41_RS19465Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2003103
Simplified PFAM architecture for HKOC_2003103
PFAM domain coverage: 209 / 447 aa (46.8%)
1 aa447 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[163-206] | HisKA[212-270] | HATPase_c[318-423]
- Domain count: 3
- Matched identifier: HKOC_2003103
- Positioned domains: HAMP 163-206 ; HisKA 212-270 ; HATPase_c 318-423
Cluster members and taxonomy
Representative gene: GCF_009909855#FNZ41_RS19465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 869 684 · GCF_000194395
AssemblyASM19439v2 · Contighaploid
Genome composition5 416 945 bp · 50,5% GCEscherichia coli 5.0959
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key