1 Response_reg#1
4-113 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:4:1.26e-21:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EC50959_RS03435
Response regulator OmpR family
Escherichia coli 5.0959 · GCF_000194395
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000194395#EC50959_RS03435Stable P2CS identifier used across views.
GenomeGCF_000194395Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 239 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:157:3.96e-27:233:77:77- Raw architecture: Response_reg:4:1.26e-21:113:111:111#Trans_reg_C:157:3.96e-27:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000194395::NZ_AEZX02000014.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1184995-1187019Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEC50959_4791RefSeq proteinWP_001092508.1
Context group ID
GCF_000194395::NZ_AEZX02000014.1::G00019Context members
EC50959_RS03440EC50959_RS03435
Partner locus tags
EC50959_RS03440EC50959_RS03435
Partner old locus tags
EC50959_4790EC50959_4791
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001092508.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN3WB37Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN3WB37_SHIDYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEC50959_RS03435Primary locus identifier stored in the genes table.
Old locus tagEC50959_4791Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AEZX02000014.1Sequence record reported by the local genomic context database.
Genomic interval1 186 300-1 187 019 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 184 995-1 187 019 ntGCF_000194395::NZ_AEZX02000014.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000194395::NZ_AEZX02000014.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AEZX02000014.1All displayed genes belong to this local TCS context.
Neighborhood span1 184 995-1 187 019 nt2 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 184 995 nt1 187 019 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EC50959_RS03440GCF_000194395#EC50959_RS03440
HKClassic
1 184 995-1 186 296 nt · Reverse (-)
EC50959_RS03435GCF_000194395#EC50959_RS03435
RROmpRCurrent focus
1 186 300-1 187 019 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905274
Simplified PFAM architecture for RROC_0905274
PFAM domain coverage: 185 / 239 aa (77.4%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[158-233]
- Domain count: 2
- Matched identifier: RROC_0905274
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 158-233 ; Trans_reg_C 158-233
Cluster members and taxonomy
Representative gene: GCF_000005845#b1608
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 869 684 · GCF_000194395
AssemblyASM19439v2 · Contighaploid
Genome composition5 416 945 bp · 50,5% GCEscherichia coli 5.0959
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key