1 Response_reg#1
6-116 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:6:3.18e-35:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EC970246_RS07145
Response regulator OmpR family
Escherichia coli 97.0246 · GCF_000194215
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000194215#EC970246_RS07145Stable P2CS identifier used across views.
GenomeGCF_000194215Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 229 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:150:1.29e-28:226:77:77- Raw architecture: Response_reg:6:3.18e-35:116:111:111#Trans_reg_C:150:1.29e-28:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000194215::NZ_AEZJ02000036.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30588-32701Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEC970246_5742RefSeq proteinWP_001188659.1
Context group ID
GCF_000194215::NZ_AEZJ02000036.1::G00008Context members
EC970246_RS07145EC970246_RS07140
Partner locus tags
EC970246_RS07145EC970246_RS07140
Partner old locus tags
EC970246_5742EC970246_5743
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001188659.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0KTK5Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0KTK5_ECOLXDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEC970246_RS07145Primary locus identifier stored in the genes table.
Old locus tagEC970246_5742Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AEZJ02000036.1Sequence record reported by the local genomic context database.
Genomic interval30 588-31 277 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 588-32 701 ntGCF_000194215::NZ_AEZJ02000036.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000194215::NZ_AEZJ02000036.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AEZJ02000036.1All displayed genes belong to this local TCS context.
Neighborhood span30 588-32 701 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 588 nt32 701 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EC970246_RS07145GCF_000194215#EC970246_RS07145
RROmpRCurrent focus
30 588-31 277 nt · Forward (+)
EC970246_RS07140GCF_000194215#EC970246_RS07140
HKClassic
31 277-32 701 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010385#ECSE_RS24340Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246202
Simplified PFAM architecture for RROC_1246202
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-116] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1246202
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000010385#ECSE_RS24340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 869 670 · GCF_000194215
AssemblyASM19421v2 · Contighaploid
Genome composition5 497 467 bp · 50,5% GCEscherichia coli 97.0246
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key