1 Response_reg#1
1-109 aa · 109 aa · 49.3% of protein
Raw token
Response_reg:1:2.97e-38:109:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ERDG_RS19685
Response regulator OmpR family
Escherichia coli E482 · GCF_000190835
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000190835#ERDG_RS19685Stable P2CS identifier used across views.
GenomeGCF_000190835Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 221 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-219 aa · 76 aa · 34.4% of protein
Raw token
Trans_reg_C:144:8.67e-27:219:76:77- Raw architecture: Response_reg:1:2.97e-38:109:110:111#Trans_reg_C:144:8.67e-27:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000190835::NZ_GL871807.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span468034-471392Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERDG_00434RefSeq proteinWP_032193009.1
Context group ID
GCF_000190835::NZ_GL871807.1::G00005Context members
ERDG_RS19685ERDG_RS19680
Partner locus tags
ERDG_RS19685ERDG_RS19680
Partner old locus tags
ERDG_00434ERDG_00435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032193009.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagERDG_RS19685Primary locus identifier stored in the genes table.
Old locus tagERDG_00434Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL871807.1Sequence record reported by the local genomic context database.
Genomic interval468 034-468 699 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span468 034-471 392 ntGCF_000190835::NZ_GL871807.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000190835::NZ_GL871807.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL871807.1All displayed genes belong to this local TCS context.
Neighborhood span468 034-471 392 nt3 359 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
468 034 nt471 392 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ERDG_RS19685GCF_000190835#ERDG_RS19685
RROmpRCurrent focus
468 034-468 699 nt · Reverse (-)
ERDG_RS19680GCF_000190835#ERDG_RS19680
HKClassic
468 696-471 392 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000190835#ERDG_RS19685The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1678128
Simplified PFAM architecture for RROC_1678128
PFAM domain coverage: 184 / 221 aa (83.3%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[1-108] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1678128
- Positioned domains: Response_reg 1-108 ; Response_reg 1-108 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_000190835#ERDG_RS19685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 550 687 · GCF_000190835
AssemblyASM19083v1 · Scaffoldhaploid
Genome composition4 857 516 bp · 50,5% GCEscherichia coli E482
Signal transduction countsGenes 58 · HK 27 · RR 31CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key