1 MASE1#1
10-277 aa · 268 aa · 53.6% of protein
Raw token
MASE1:10:4.71e-20:277:300:299P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ERDG_RS01565
Histidine kinase, Classic
Escherichia coli E482 · GCF_000190835
ClassHKTypeClassicLength500 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000190835#ERDG_RS01565Stable P2CS identifier used across views.
GenomeGCF_000190835Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
MASE1HisKA_3HATPase_c
Protein length500 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage420 / 500 aa (84.0%)Merged over positioned domains only.
Domain description1 MASE1,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa500 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
305-370 aa · 66 aa · 13.2% of protein
Raw token
HisKA_3:305:0.0000000000000022:370:67:683 HATPase_c#3
411-496 aa · 86 aa · 17.2% of protein
Raw token
HATPase_c:411:0.00000000000000113:496:104:109- Raw architecture: MASE1:10:4.71e-20:277:300:299#HisKA_3:305:0.0000000000000022:370:67:68#HATPase_c:411:0.00000000000000113:496:104:109
- Domain description: 1 MASE1,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000190835::NZ_GL871815.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91918-94010Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERDG_04244RefSeq proteinWP_024184953.1
Context group ID
GCF_000190835::NZ_GL871815.1::G00033Context members
ERDG_RS01570ERDG_RS01565
Partner locus tags
ERDG_RS01570ERDG_RS01565
Partner old locus tags
ERDG_04243ERDG_04244
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_024184953.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagERDG_RS01565Primary locus identifier stored in the genes table.
Old locus tagERDG_04244Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL871815.1Sequence record reported by the local genomic context database.
Genomic interval92 508-94 010 nt1 503 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 918-94 010 ntGCF_000190835::NZ_GL871815.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000190835::NZ_GL871815.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL871815.1All displayed genes belong to this local TCS context.
Neighborhood span91 918-94 010 nt2 093 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 918 nt94 010 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ERDG_RS01570GCF_000190835#ERDG_RS01570
RRunclassified
91 918-92 508 nt · Forward (+)
ERDG_RS01565GCF_000190835#ERDG_RS01565
HKClassicCurrent focus
92 508-94 010 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000190835#ERDG_RS01565The current gene is the representative for this cluster.
PFAM architectureMASE1 + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1474685
Simplified PFAM architecture for HKOC_1474685
PFAM domain coverage: 418 / 500 aa (83.6%)
1 aa500 aa
MASE1HisKA_3HATPase_c
- Simplified architecture: MASE1 + HisKA_3 + HATPase_c
- Raw architecture: MASE1[12-276] | HisKA_3[305-370] | HATPase_c[411-497]
- Domain count: 3
- Matched identifier: HKOC_1474685
- Positioned domains: MASE1 12-276 ; HisKA_3 305-370 ; HATPase_c 411-497
Cluster members and taxonomy
Representative gene: GCF_000190835#ERDG_RS01565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 550 687 · GCF_000190835
AssemblyASM19083v1 · Scaffoldhaploid
Genome composition4 857 516 bp · 50,5% GCEscherichia coli E482
Signal transduction countsGenes 58 · HK 27 · RR 31CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key