1 Response_reg#1
4-117 aa · 114 aa · 47.7% of protein
Raw token
Response_reg:4:8.3e-20:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ERDG_RS06380
Response regulator, unclassified
Escherichia coli E482 · GCF_000190835
ClassRRTypeunclassifiedLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000190835#ERDG_RS06380Stable P2CS identifier used across views.
GenomeGCF_000190835Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regCitT
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage141 / 239 aa (59.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 CitTSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 CitT#2
134-160 aa · 27 aa · 11.3% of protein
Raw token
CitT:134:0.0000321:160:27:30- Raw architecture: Response_reg:4:8.3e-20:117:114:111#CitT:134:0.0000321:160:27:30
- Domain description: 1 Response_reg,1 CitT
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000190835::NZ_GL871811.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span136284-137003Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERDG_03240RefSeq proteinWP_000611289.1
Context group ID
GCF_000190835::NZ_GL871811.1::G00029Context members
ERDG_RS06380
Partner locus tags
ERDG_RS06380
Partner old locus tags
ERDG_03240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000611289.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagERDG_RS06380Primary locus identifier stored in the genes table.
Old locus tagERDG_03240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL871811.1Sequence record reported by the local genomic context database.
Genomic interval136 284-137 003 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span136 284-137 003 ntGCF_000190835::NZ_GL871811.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000190835::NZ_GL871811.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL871811.1All displayed genes belong to this local TCS context.
Neighborhood span136 284-137 003 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 284 nt137 003 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ERDG_RS06380GCF_000190835#ERDG_RS06380
RRunclassifiedCurrent focus
136 284-137 003 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000190835#ERDG_RS06380The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0905839
Simplified PFAM architecture for RROC_0905839
PFAM domain coverage: 114 / 239 aa (47.7%)
1 aa239 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-117]
- Domain count: 1
- Matched identifier: RROC_0905839
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117
Cluster members and taxonomy
Representative gene: GCF_000190835#ERDG_RS06380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 550 687 · GCF_000190835
AssemblyASM19083v1 · Scaffoldhaploid
Genome composition4 857 516 bp · 50,5% GCEscherichia coli E482
Signal transduction countsGenes 58 · HK 27 · RR 31CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key