1 His_kinase#1
122-201 aa · 80 aa · 22.9% of protein
Raw token
His_kinase:122:3.47e-32:201:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS21960
Histidine kinase, Classic
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassHKTypeClassicLength349 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189595#HMPREF9474_RS21960Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length349 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 349 aa (53.6%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa349 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
228-334 aa · 107 aa · 30.7% of protein
Raw token
HATPase_c:228:0.0000000000000256:334:107:109- Raw architecture: His_kinase:122:3.47e-32:201:80:80#HATPase_c:228:0.0000000000000256:334:107:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189595::NZ_GL834320.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58838-61515Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_04263RefSeq proteinWP_003504606.1
Context group ID
GCF_000189595::NZ_GL834320.1::G00059Context members
HMPREF9474_RS21960HMPREF9474_RS21965
Partner locus tags
HMPREF9474_RS21960HMPREF9474_RS21965
Partner old locus tags
HMPREF9474_04263HMPREF9474_04264
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003504606.1Primary protein accession used for annex mappings.
UniProt accessionE7GTL8Primary UniProt accession resolved in the annex database.
UniProt IDE7GTL8_CLOS6Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS21960Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_04263Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834320.1Sequence record reported by the local genomic context database.
Genomic interval58 838-59 887 nt1 050 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span58 838-61 515 ntGCF_000189595::NZ_GL834320.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834320.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834320.1All displayed genes belong to this local TCS context.
Neighborhood span58 838-61 515 nt2 678 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 838 nt61 515 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9474_RS21960GCF_000189595#HMPREF9474_RS21960
HKClassicCurrent focus
58 838-59 887 nt · Reverse (-)
HMPREF9474_RS21965GCF_000189595#HMPREF9474_RS21965
RRunclassified
59 926-61 515 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS21960The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2800996
Simplified PFAM architecture for HKOC_2800996
PFAM domain coverage: 191 / 349 aa (54.7%)
1 aa349 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[122-201] | HATPase_c[225-335]
- Domain count: 2
- Matched identifier: HKOC_2800996
- Positioned domains: His_kinase 122-201 ; HATPase_c 225-335
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS21960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key