1 GGDEF#1
305-457 aa · 153 aa · 14.8% of protein
Raw token
GGDEF:305:1.36e-20:457:160:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS19995
Histidine kinase, Hybrid
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassHKTypeHybridLength1032 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189595#HMPREF9474_RS19995Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1032 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage454 / 1032 aa (44.0%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1032 aa
Domain-by-domain annotation4 items
2 HisKA#2
651-717 aa · 67 aa · 6.5% of protein
Raw token
HisKA:651:2.34e-17:717:67:643 HATPase_c#3
764-880 aa · 117 aa · 11.3% of protein
Raw token
HATPase_c:764:2.82e-32:880:117:1094 Response_reg#4
906-1022 aa · 117 aa · 11.3% of protein
Raw token
Response_reg:906:1.14e-31:1022:117:111- Raw architecture: GGDEF:305:1.36e-20:457:160:160#HisKA:651:2.34e-17:717:67:64#HATPase_c:764:2.82e-32:880:117:109#Response_reg:906:1.14e-31:1022:117:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189595::NZ_GL834317.1::G00053
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span82973-86071Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_03881RefSeq proteinWP_003503816.1
Context group ID
GCF_000189595::NZ_GL834317.1::G00053Context members
HMPREF9474_RS19995
Partner locus tags
HMPREF9474_RS19995
Partner old locus tags
HMPREF9474_03881
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003503816.1Primary protein accession used for annex mappings.
UniProt accessionE7GSI6Primary UniProt accession resolved in the annex database.
UniProt IDE7GSI6_CLOS6Display identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS19995Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_03881Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834317.1Sequence record reported by the local genomic context database.
Genomic interval82 973-86 071 nt3 099 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span82 973-86 071 ntGCF_000189595::NZ_GL834317.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834317.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834317.1All displayed genes belong to this local TCS context.
Neighborhood span82 973-86 071 nt3 099 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 973 nt86 071 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9474_RS19995GCF_000189595#HMPREF9474_RS19995
HKHybridCurrent focus
82 973-86 071 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS19995The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0269729
Simplified PFAM architecture for HKOC_0269729
PFAM domain coverage: 449 / 1032 aa (43.5%)
1 aa1032 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[305-455] | HisKA[651-717] | HATPase_c[765-879] | Response_reg[906-1021]
- Domain count: 4
- Matched identifier: HKOC_0269729
- Positioned domains: GGDEF 305-455 ; HisKA 651-717 ; HATPase_c 765-879 ; Response_reg 906-1021
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS19995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key