1 dCache_1#1
165-281 aa · 117 aa · 13.7% of protein
Raw token
dCache_1:165:0.000057:281:118:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS13170
Histidine kinase, Hybrid
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassHKTypeHybridLength852 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189595#HMPREF9474_RS13170Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length852 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage536 / 852 aa (62.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa852 aa
Domain-by-domain annotation5 items
2 HisKA#2
344-410 aa · 67 aa · 7.9% of protein
Raw token
HisKA:344:4.87e-17:410:67:643 HATPase_c#3
458-576 aa · 119 aa · 14.0% of protein
Raw token
HATPase_c:458:5.27e-27:576:119:1094 Response_reg#4
592-706 aa · 115 aa · 13.5% of protein
Raw token
Response_reg:592:3.46e-22:706:115:1115 Response_reg#5
731-848 aa · 118 aa · 13.8% of protein
Raw token
Response_reg:731:2.53e-26:848:118:111- Raw architecture: dCache_1:165:0.000057:281:118:195#HisKA:344:4.87e-17:410:67:64#HATPase_c:458:5.27e-27:576:119:109#Response_reg:592:3.46e-22:706:115:111#Response_reg:731:2.53e-26:848:118:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189595::NZ_GL834311.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10246-14843Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_02577RefSeq proteinWP_195481630.1
Context group ID
GCF_000189595::NZ_GL834311.1::G00042Context members
HMPREF9474_RS13160HMPREF9474_RS13170
Partner locus tags
HMPREF9474_RS13160HMPREF9474_RS13170
Partner old locus tags
HMPREF9474_02575HMPREF9474_02577
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195481630.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS13170Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_02577Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834311.1Sequence record reported by the local genomic context database.
Genomic interval12 285-14 843 nt2 559 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 246-14 843 ntGCF_000189595::NZ_GL834311.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834311.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834311.1All displayed genes belong to this local TCS context.
Neighborhood span10 246-14 843 nt4 598 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 246 nt14 843 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9474_RS13160GCF_000189595#HMPREF9474_RS13160
RRRpfG
10 246-11 898 nt · Forward (+)
HMPREF9474_RS13170GCF_000189595#HMPREF9474_RS13170
HKHybridCurrent focus
12 285-14 843 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS13170The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0484749
Simplified PFAM architecture for HKOC_0484749
PFAM domain coverage: 415 / 852 aa (48.7%)
1 aa852 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[344-410] | HATPase_c[458-575] | Response_reg[592-705] | Response_reg[731-846]
- Domain count: 4
- Matched identifier: HKOC_0484749
- Positioned domains: HisKA 344-410 ; HATPase_c 458-575 ; Response_reg 592-705 ; Response_reg 731-846
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS13170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key