1 Response_reg#1
7-117 aa · 111 aa · 54.4% of protein
Raw token
Response_reg:7:2.38e-25:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS12815
Response regulator, unclassified
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassRRTypeunclassifiedLength204 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189595#HMPREF9474_RS12815Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length204 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 204 aa (54.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa204 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:2.38e-25:117:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189595::NZ_GL834310.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span274279-276262Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_02509RefSeq proteinWP_003500986.1
Context group ID
GCF_000189595::NZ_GL834310.1::G00040Context members
HMPREF9474_RS12815HMPREF9474_RS12820
Partner locus tags
HMPREF9474_RS12815HMPREF9474_RS12820
Partner old locus tags
HMPREF9474_02509HMPREF9474_02510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003500986.1Primary protein accession used for annex mappings.
UniProt accessionE7GNL4Primary UniProt accession resolved in the annex database.
UniProt IDE7GNL4_CLOS6Display identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS12815Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_02509Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834310.1Sequence record reported by the local genomic context database.
Genomic interval274 279-274 893 nt615 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span274 279-276 262 ntGCF_000189595::NZ_GL834310.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834310.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834310.1All displayed genes belong to this local TCS context.
Neighborhood span274 279-276 262 nt1 984 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
274 279 nt276 262 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9474_RS12815GCF_000189595#HMPREF9474_RS12815
RRunclassifiedCurrent focus
274 279-274 893 nt · Reverse (-)
HMPREF9474_RS12820GCF_000189595#HMPREF9474_RS12820
HKClassic
274 859-276 262 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS12815The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2098309
Simplified PFAM architecture for RROC_2098309
PFAM domain coverage: 111 / 204 aa (54.4%)
1 aa204 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[7-117]
- Domain count: 1
- Matched identifier: RROC_2098309
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS12815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key