1 H_kinase_N#1
7-143 aa · 137 aa · 39.0% of protein
Raw token
H_kinase_N:7:1.38e-34:143:137:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS12635
Histidine kinase, Classic
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189595#HMPREF9474_RS12635Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
H_kinase_NHisKA_2HATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage307 / 351 aa (87.5%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation3 items
2 HisKA_2#2
163-237 aa · 75 aa · 21.4% of protein
Raw token
HisKA_2:163:5.62e-23:237:76:763 HATPase_c#3
257-351 aa · 95 aa · 27.1% of protein
Raw token
HATPase_c:257:0.00000000000299:351:111:109- Raw architecture: H_kinase_N:7:1.38e-34:143:137:139#HisKA_2:163:5.62e-23:237:76:76#HATPase_c:257:0.00000000000299:351:111:109
- Domain description: 1 H_kinase_N,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189595::NZ_GL834310.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span234240-236019Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_02473RefSeq proteinWP_202883084.1
Context group ID
GCF_000189595::NZ_GL834310.1::G00039Context members
HMPREF9474_RS12635HMPREF9474_RS12640
Partner locus tags
HMPREF9474_RS12635HMPREF9474_RS12640
Partner old locus tags
HMPREF9474_02473HMPREF9474_02474
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_202883084.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS12635Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_02473Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834310.1Sequence record reported by the local genomic context database.
Genomic interval234 240-235 295 nt1 056 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span234 240-236 019 ntGCF_000189595::NZ_GL834310.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834310.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834310.1All displayed genes belong to this local TCS context.
Neighborhood span234 240-236 019 nt1 780 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
234 240 nt236 019 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9474_RS12635GCF_000189595#HMPREF9474_RS12635
HKClassicCurrent focus
234 240-235 295 nt · Reverse (-)
HMPREF9474_RS12640GCF_000189595#HMPREF9474_RS12640
RRAmiR_NasR
235 297-236 019 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS12635The current gene is the representative for this cluster.
PFAM architectureGAF_PdtaS + HisKA_2 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2792607
Simplified PFAM architecture for HKOC_2792607
PFAM domain coverage: 305 / 351 aa (86.9%)
1 aa351 aa
GAF_PdtaSHisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[6-143] | HisKA_2[163-237] | HATPase_c[259-350]
- Domain count: 3
- Matched identifier: HKOC_2792607
- Positioned domains: GAF_PdtaS 6-143 ; HisKA_2 163-237 ; HATPase_c 259-350
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS12635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key