1 HisKA#1
148-202 aa · 55 aa · 15.4% of protein
Raw token
HisKA:148:0.0000322:202:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS12245
Histidine kinase, Classic
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189595#HMPREF9474_RS12245Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 358 aa (45.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
245-351 aa · 107 aa · 29.9% of protein
Raw token
HATPase_c:245:1.83e-28:351:108:109- Raw architecture: HisKA:148:0.0000322:202:59:64#HATPase_c:245:1.83e-28:351:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189595::NZ_GL834310.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span152704-154467Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_02393RefSeq proteinWP_003500755.1
Context group ID
GCF_000189595::NZ_GL834310.1::G00038Context members
HMPREF9474_RS12245HMPREF9474_RS12250
Partner locus tags
HMPREF9474_RS12245HMPREF9474_RS12250
Partner old locus tags
HMPREF9474_02393HMPREF9474_02394
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003500755.1Primary protein accession used for annex mappings.
UniProt accessionE7GN98Primary UniProt accession resolved in the annex database.
UniProt IDE7GN98_CLOS6Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS12245Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_02393Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834310.1Sequence record reported by the local genomic context database.
Genomic interval152 704-153 780 nt1 077 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span152 704-154 467 ntGCF_000189595::NZ_GL834310.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834310.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834310.1All displayed genes belong to this local TCS context.
Neighborhood span152 704-154 467 nt1 764 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
152 704 nt154 467 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9474_RS12245GCF_000189595#HMPREF9474_RS12245
HKClassicCurrent focus
152 704-153 780 nt · Reverse (-)
HMPREF9474_RS12250GCF_000189595#HMPREF9474_RS12250
RROmpR
153 796-154 467 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS12245The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2758968
Simplified PFAM architecture for HKOC_2758968
PFAM domain coverage: 107 / 358 aa (29.9%)
1 aa358 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[246-352]
- Domain count: 1
- Matched identifier: HKOC_2758968
- Positioned domains: HATPase_c 246-352
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS12245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key