1 HAMP#1
170-240 aa · 71 aa · 15.2% of protein
Raw token
HAMP:170:0.00000000000696:240:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS09980
Histidine kinase, Classic
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189595#HMPREF9474_RS09980Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 466 aa (52.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-307 aa · 64 aa · 13.7% of protein
Raw token
HisKA:244:0.000000000497:307:64:643 HATPase_c#3
353-462 aa · 110 aa · 23.6% of protein
Raw token
HATPase_c:353:3.03e-33:462:110:109- Raw architecture: HAMP:170:0.00000000000696:240:71:69#HisKA:244:0.000000000497:307:64:64#HATPase_c:353:3.03e-33:462:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189595::NZ_GL834309.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21539-23637Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_01941RefSeq proteinWP_003499901.1
Context group ID
GCF_000189595::NZ_GL834309.1::G00029Context members
HMPREF9474_RS09975HMPREF9474_RS09980
Partner locus tags
HMPREF9474_RS09975HMPREF9474_RS09980
Partner old locus tags
HMPREF9474_01940HMPREF9474_01941
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003499901.1Primary protein accession used for annex mappings.
UniProt accessionE7GLZ6Primary UniProt accession resolved in the annex database.
UniProt IDE7GLZ6_CLOS6Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS09980Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_01941Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834309.1Sequence record reported by the local genomic context database.
Genomic interval22 237-23 637 nt1 401 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 539-23 637 ntGCF_000189595::NZ_GL834309.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834309.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834309.1All displayed genes belong to this local TCS context.
Neighborhood span21 539-23 637 nt2 099 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 539 nt23 637 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9474_RS09975GCF_000189595#HMPREF9474_RS09975
RROmpR
21 539-22 240 nt · Forward (+)
HMPREF9474_RS09980GCF_000189595#HMPREF9474_RS09980
HKClassicCurrent focus
22 237-23 637 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS09980The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1761821
Simplified PFAM architecture for HKOC_1761821
PFAM domain coverage: 227 / 466 aa (48.7%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[187-240] | HisKA[244-305] | HATPase_c[354-464]
- Domain count: 3
- Matched identifier: HKOC_1761821
- Positioned domains: HAMP 187-240 ; HisKA 244-305 ; HATPase_c 354-464
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS09980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key