1 HisKA#1
112-177 aa · 66 aa · 20.1% of protein
Raw token
HisKA:112:0.000000000911:177:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS05895
Histidine kinase, Classic
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassHKTypeClassicLength329 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189595#HMPREF9474_RS05895Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length329 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 329 aa (52.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa329 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
222-328 aa · 107 aa · 32.5% of protein
Raw token
HATPase_c:222:6.54e-27:328:108:109- Raw architecture: HisKA:112:0.000000000911:177:66:64#HATPase_c:222:6.54e-27:328:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189595::NZ_GL834306.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span488969-490631Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_01140RefSeq proteinWP_003499299.1
Context group ID
GCF_000189595::NZ_GL834306.1::G00023Context members
HMPREF9474_RS05890HMPREF9474_RS05895
Partner locus tags
HMPREF9474_RS05890HMPREF9474_RS05895
Partner old locus tags
HMPREF9474_01139HMPREF9474_01140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003499299.1Primary protein accession used for annex mappings.
UniProt accessionE7GJP7Primary UniProt accession resolved in the annex database.
UniProt IDE7GJP7_CLOS6Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS05895Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_01140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834306.1Sequence record reported by the local genomic context database.
Genomic interval489 642-490 631 nt990 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span488 969-490 631 ntGCF_000189595::NZ_GL834306.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834306.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834306.1All displayed genes belong to this local TCS context.
Neighborhood span488 969-490 631 nt1 663 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
488 969 nt490 631 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9474_RS05890GCF_000189595#HMPREF9474_RS05890
RROmpR
488 969-489 652 nt · Forward (+)
HMPREF9474_RS05895GCF_000189595#HMPREF9474_RS05895
HKClassicCurrent focus
489 642-490 631 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS05895The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2857964
Simplified PFAM architecture for HKOC_2857964
PFAM domain coverage: 171 / 329 aa (52.0%)
1 aa329 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[114-177] | HATPase_c[222-328]
- Domain count: 2
- Matched identifier: HKOC_2857964
- Positioned domains: HisKA 114-177 ; HATPase_c 222-328
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS05895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key