1 Response_reg#1
4-116 aa · 113 aa · 43.1% of protein
Raw token
Response_reg:4:2.97e-25:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS03415
Response regulator, unclassified
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassRRTypeunclassifiedLength262 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189595#HMPREF9474_RS03415Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage186 / 262 aa (71.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
164-205 aa · 42 aa · 16.0% of protein
Raw token
HTH_AraC:164:0.00000000777:205:42:423 HTH_AraC#3
223-253 aa · 31 aa · 11.8% of protein
Raw token
HTH_AraC:223:0.0000492:253:31:42- Raw architecture: Response_reg:4:2.97e-25:116:116:111#HTH_AraC:164:0.00000000777:205:42:42#HTH_AraC:223:0.0000492:253:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189595::NZ_GL834305.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span809196-811685Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_00658RefSeq proteinWP_003498272.1
Context group ID
GCF_000189595::NZ_GL834305.1::G00014Context members
HMPREF9474_RS03415HMPREF9474_RS03420
Partner locus tags
HMPREF9474_RS03415HMPREF9474_RS03420
Partner old locus tags
HMPREF9474_00658HMPREF9474_00659
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003498272.1Primary protein accession used for annex mappings.
UniProt accessionE7GIB5Primary UniProt accession resolved in the annex database.
UniProt IDE7GIB5_CLOS6Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS03415Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_00658Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834305.1Sequence record reported by the local genomic context database.
Genomic interval809 196-809 984 nt789 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span809 196-811 685 ntGCF_000189595::NZ_GL834305.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834305.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834305.1All displayed genes belong to this local TCS context.
Neighborhood span809 196-811 685 nt2 490 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
809 196 nt811 685 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9474_RS03415GCF_000189595#HMPREF9474_RS03415
RRunclassifiedCurrent focus
809 196-809 984 nt · Reverse (-)
HMPREF9474_RS03420GCF_000189595#HMPREF9474_RS03420
HKClassic
809 988-811 685 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS03415The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0644159
Simplified PFAM architecture for RROC_0644159
PFAM domain coverage: 188 / 262 aa (71.8%)
1 aa262 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[179-253]
- Domain count: 2
- Matched identifier: RROC_0644159
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 179-253 ; HTH_18 179-253
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS03415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key