1 Response_reg#1
4-107 aa · 104 aa · 43.2% of protein
Raw token
Response_reg:4:7.2e-18:107:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS03130
Response regulator LytTR family
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189595#HMPREF9474_RS03130Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 241 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-233 aa · 94 aa · 39.0% of protein
Raw token
LytTR:140:0.0000000000349:233:101:98- Raw architecture: Response_reg:4:7.2e-18:107:106:111#LytTR:140:0.0000000000349:233:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189595::NZ_GL834305.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span732233-732958Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_00601RefSeq proteinWP_242827564.1
Context group ID
GCF_000189595::NZ_GL834305.1::G00012Context members
HMPREF9474_RS03130
Partner locus tags
HMPREF9474_RS03130
Partner old locus tags
HMPREF9474_00601
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242827564.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3DEC3Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3DEC3_CLOSYDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS03130Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_00601Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834305.1Sequence record reported by the local genomic context database.
Genomic interval732 233-732 958 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span732 233-732 958 ntGCF_000189595::NZ_GL834305.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834305.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834305.1All displayed genes belong to this local TCS context.
Neighborhood span732 233-732 958 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
732 233 nt732 958 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9474_RS03130GCF_000189595#HMPREF9474_RS03130
RRLytTRCurrent focus
732 233-732 958 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553815#I2F58_RS11540Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0715731
Simplified PFAM architecture for RROC_0715731
PFAM domain coverage: 197 / 251 aa (78.5%)
1 aa251 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[15-117] | LytTR[150-243]
- Domain count: 2
- Matched identifier: RROC_0715731
- Positioned domains: Response_reg 15-117 ; LytTR 150-243
Cluster members and taxonomy
Representative gene: GCF_015553815#I2F58_RS11540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key