1 HisKA#1
256-311 aa · 56 aa · 11.8% of protein
Raw token
HisKA:256:0.00000486:311:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS03120
Histidine kinase, Classic
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189595#HMPREF9474_RS03120Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 473 aa (34.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
357-464 aa · 108 aa · 22.8% of protein
Raw token
HATPase_c:357:7.65e-19:464:112:109- Raw architecture: HisKA:256:0.00000486:311:56:64#HATPase_c:357:7.65e-19:464:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189595::NZ_GL834305.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span728556-730587Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_00599RefSeq proteinWP_003498133.1
Context group ID
GCF_000189595::NZ_GL834305.1::G00011Context members
HMPREF9474_RS03115HMPREF9474_RS03120
Partner locus tags
HMPREF9474_RS03115HMPREF9474_RS03120
Partner old locus tags
HMPREF9474_00598HMPREF9474_00599
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003498133.1Primary protein accession used for annex mappings.
UniProt accessionE7GHX8Primary UniProt accession resolved in the annex database.
UniProt IDE7GHX8_CLOS6Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS03120Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_00599Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834305.1Sequence record reported by the local genomic context database.
Genomic interval729 166-730 587 nt1 422 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span728 556-730 587 ntGCF_000189595::NZ_GL834305.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834305.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834305.1All displayed genes belong to this local TCS context.
Neighborhood span728 556-730 587 nt2 032 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
728 556 nt730 587 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9474_RS03115GCF_000189595#HMPREF9474_RS03115
RRunclassified
728 556-729 185 nt · Reverse (-)
HMPREF9474_RS03120GCF_000189595#HMPREF9474_RS03120
HKClassicCurrent focus
729 166-730 587 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553815#I2F58_RS19050Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1570716
Simplified PFAM architecture for HKOC_1570716
PFAM domain coverage: 164 / 486 aa (33.7%)
1 aa486 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[270-325] | HATPase_c[369-476]
- Domain count: 2
- Matched identifier: HKOC_1570716
- Positioned domains: HisKA 270-325 ; HATPase_c 369-476
Cluster members and taxonomy
Representative gene: GCF_015553815#I2F58_RS19050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key