1 Response_reg#1
4-109 aa · 106 aa · 23.2% of protein
Raw token
Response_reg:4:3.7e-25:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS02065
Response regulator, unclassified
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassRRTypeunclassifiedLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189595#HMPREF9474_RS02065Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage226 / 457 aa (49.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation2 items
2 AAA_5#2
160-279 aa · 120 aa · 26.3% of protein
Raw token
AAA_5:160:0.00000000118:279:129:135- Raw architecture: Response_reg:4:3.7e-25:109:106:111#AAA_5:160:0.00000000118:279:129:135
- Domain description: 1 Response_reg,1 AAA_5
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189595::NZ_GL834305.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span491322-494016Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_00393RefSeq proteinWP_003497756.1
Context group ID
GCF_000189595::NZ_GL834305.1::G00007Context members
HMPREF9474_RS02065HMPREF9474_RS02070
Partner locus tags
HMPREF9474_RS02065HMPREF9474_RS02070
Partner old locus tags
HMPREF9474_00393HMPREF9474_00394
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003497756.1Primary protein accession used for annex mappings.
UniProt accessionE7GHK0Primary UniProt accession resolved in the annex database.
UniProt IDE7GHK0_CLOS6Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS02065Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_00393Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834305.1Sequence record reported by the local genomic context database.
Genomic interval491 322-492 695 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span491 322-494 016 ntGCF_000189595::NZ_GL834305.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834305.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834305.1All displayed genes belong to this local TCS context.
Neighborhood span491 322-494 016 nt2 695 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
491 322 nt494 016 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9474_RS02065GCF_000189595#HMPREF9474_RS02065
RRunclassifiedCurrent focus
491 322-492 695 nt · Reverse (-)
HMPREF9474_RS02070GCF_000189595#HMPREF9474_RS02070
HKClassic
492 670-494 016 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS02065The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_143 domains in the representative PFAM annotation.
PFAM architecture for RROC_0253330
Simplified PFAM architecture for RROC_0253330
PFAM domain coverage: 340 / 457 aa (74.4%)
1 aa457 aa
Response_regSigma54_activatAAA_lid_14
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14
- Raw architecture: Response_reg[4-110] | Sigma54_activat[138-303] | AAA_lid_14[309-375]
- Domain count: 3
- Matched identifier: RROC_0253330
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; Sigma54_activat 138-303 ; Sigma54_activat 138-303 ; AAA_lid_14 309-375 ; AAA_lid_14 309-375
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS02065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key