1 HAMP#1
171-240 aa · 70 aa · 14.7% of protein
Raw token
HAMP:171:4.5e-16:240:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS17685
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000186525
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS17685Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 476 aa (50.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-311 aa · 61 aa · 12.8% of protein
Raw token
HisKA:251:0.00000000565:311:61:643 HATPase_c#3
361-471 aa · 111 aa · 23.3% of protein
Raw token
HATPase_c:361:1.85e-22:471:111:109- Raw architecture: HAMP:171:4.5e-16:240:70:69#HisKA:251:0.00000000565:311:61:64#HATPase_c:361:1.85e-22:471:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636584.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35230-37316Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_03504RefSeq proteinWP_008790586.1
Context group ID
GCF_000186525::NZ_GL636584.1::G00033Context members
HMPREF9488_RS17685HMPREF9488_RS17690
Partner locus tags
HMPREF9488_RS17685HMPREF9488_RS17690
Partner old locus tags
HMPREF9488_03504HMPREF9488_03505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008790586.1Primary protein accession used for annex mappings.
UniProt accessionE7GFG1Primary UniProt accession resolved in the annex database.
UniProt IDE7GFG1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS17685Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_03504Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636584.1Sequence record reported by the local genomic context database.
Genomic interval35 230-36 660 nt1 431 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 230-37 316 ntGCF_000186525::NZ_GL636584.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636584.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636584.1All displayed genes belong to this local TCS context.
Neighborhood span35 230-37 316 nt2 087 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 230 nt37 316 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS17685GCF_000186525#HMPREF9488_RS17685
HKClassicCurrent focus
35 230-36 660 nt · Reverse (-)
HMPREF9488_RS17690GCF_000186525#HMPREF9488_RS17690
RROmpR
36 657-37 316 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS17685The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1654927
Simplified PFAM architecture for HKOC_1654927
PFAM domain coverage: 219 / 476 aa (46.0%)
1 aa476 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[189-239] | HisKA[253-311] | HATPase_c[361-469]
- Domain count: 3
- Matched identifier: HKOC_1654927
- Positioned domains: HAMP 189-239 ; HisKA 253-311 ; HATPase_c 361-469
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS17685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key