1 HAMP#1
174-236 aa · 63 aa · 13.8% of protein
Raw token
HAMP:174:0.000000342:236:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS17375
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000186525
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS17375Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 456 aa (48.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation3 items
2 HisKA#2
241-304 aa · 64 aa · 14.0% of protein
Raw token
HisKA:241:0.00000000475:304:64:643 HATPase_c#3
349-443 aa · 95 aa · 20.8% of protein
Raw token
HATPase_c:349:0.0000000000000359:443:104:109- Raw architecture: HAMP:174:0.000000342:236:65:69#HisKA:241:0.00000000475:304:64:64#HATPase_c:349:0.0000000000000359:443:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636583.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115452-117480Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_03444RefSeq proteinWP_008790526.1
Context group ID
GCF_000186525::NZ_GL636583.1::G00032Context members
HMPREF9488_RS17375HMPREF9488_RS17380
Partner locus tags
HMPREF9488_RS17375HMPREF9488_RS17380
Partner old locus tags
HMPREF9488_03444HMPREF9488_03445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008790526.1Primary protein accession used for annex mappings.
UniProt accessionE7GFA1Primary UniProt accession resolved in the annex database.
UniProt IDE7GFA1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS17375Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_03444Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636583.1Sequence record reported by the local genomic context database.
Genomic interval115 452-116 822 nt1 371 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 452-117 480 ntGCF_000186525::NZ_GL636583.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636583.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636583.1All displayed genes belong to this local TCS context.
Neighborhood span115 452-117 480 nt2 029 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 452 nt117 480 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS17375GCF_000186525#HMPREF9488_RS17375
HKClassicCurrent focus
115 452-116 822 nt · Reverse (-)
HMPREF9488_RS17380GCF_000186525#HMPREF9488_RS17380
RROmpR
116 824-117 480 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS17375The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1887764
Simplified PFAM architecture for HKOC_1887764
PFAM domain coverage: 158 / 456 aa (34.6%)
1 aa456 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[241-304] | HATPase_c[349-442]
- Domain count: 2
- Matched identifier: HKOC_1887764
- Positioned domains: HisKA 241-304 ; HATPase_c 349-442
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS17375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key