1 HAMP#1
28-96 aa · 69 aa · 19.8% of protein
Raw token
HAMP:28:0.000000000667:96:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS10600
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000186525
ClassHKTypeClassicLength348 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS10600Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length348 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 348 aa (70.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa348 aa
Domain-by-domain annotation3 items
2 HisKA#2
121-186 aa · 66 aa · 19.0% of protein
Raw token
HisKA:121:0.00000000000167:186:66:643 HATPase_c#3
234-342 aa · 109 aa · 31.3% of protein
Raw token
HATPase_c:234:2.99e-27:342:110:109- Raw architecture: HAMP:28:0.000000000667:96:69:69#HisKA:121:0.00000000000167:186:66:64#HATPase_c:234:2.99e-27:342:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636579.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span387432-389248Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_02114RefSeq proteinWP_236916399.1
Context group ID
GCF_000186525::NZ_GL636579.1::G00024Context members
HMPREF9488_RS10600HMPREF9488_RS10605
Partner locus tags
HMPREF9488_RS10600HMPREF9488_RS10605
Partner old locus tags
HMPREF9488_02114HMPREF9488_02115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236916399.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS10600Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_02114Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636579.1Sequence record reported by the local genomic context database.
Genomic interval387 432-388 478 nt1 047 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span387 432-389 248 ntGCF_000186525::NZ_GL636579.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636579.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636579.1All displayed genes belong to this local TCS context.
Neighborhood span387 432-389 248 nt1 817 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
387 432 nt389 248 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS10600GCF_000186525#HMPREF9488_RS10600
HKClassicCurrent focus
387 432-388 478 nt · Reverse (-)
HMPREF9488_RS10605GCF_000186525#HMPREF9488_RS10605
RROmpR
388 553-389 248 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040925985#AB5768_RS16430Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2662719
Simplified PFAM architecture for HKOC_2662719
PFAM domain coverage: 225 / 374 aa (60.2%)
1 aa374 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[72-121] | HisKA[147-212] | HATPase_c[260-368]
- Domain count: 3
- Matched identifier: HKOC_2662719
- Positioned domains: HAMP 72-121 ; HisKA 147-212 ; HATPase_c 260-368
Cluster members and taxonomy
Representative gene: GCF_040925985#AB5768_RS16430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key