1 KdpD#1
23-231 aa · 209 aa · 23.4% of protein
Raw token
KdpD:23:1.24e-138:231:209:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS10305
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000186525
ClassHKTypeClassicLength894 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS10305Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length894 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 894 aa (43.6%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa894 aa
Domain-by-domain annotation3 items
2 HisKA#2
666-733 aa · 68 aa · 7.6% of protein
Raw token
HisKA:666:0.00000000000707:733:68:643 HATPase_c#3
777-889 aa · 113 aa · 12.6% of protein
Raw token
HATPase_c:777:4.47e-28:889:113:109- Raw architecture: KdpD:23:1.24e-138:231:209:210#HisKA:666:0.00000000000707:733:68:64#HATPase_c:777:4.47e-28:889:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636579.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span330333-333714Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_02063RefSeq proteinWP_029158229.1
Context group ID
GCF_000186525::NZ_GL636579.1::G00023Context members
HMPREF9488_RS10305HMPREF9488_RS10310
Partner locus tags
HMPREF9488_RS10305HMPREF9488_RS10310
Partner old locus tags
HMPREF9488_02063HMPREF9488_02064
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_029158229.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS10305Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_02063Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636579.1Sequence record reported by the local genomic context database.
Genomic interval330 333-333 020 nt2 688 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span330 333-333 714 ntGCF_000186525::NZ_GL636579.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636579.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636579.1All displayed genes belong to this local TCS context.
Neighborhood span330 333-333 714 nt3 382 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
330 333 nt333 714 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS10305GCF_000186525#HMPREF9488_RS10305
HKClassicCurrent focus
330 333-333 020 nt · Forward (+)
HMPREF9488_RS10310GCF_000186525#HMPREF9488_RS10310
RROmpR
333 013-333 714 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS10305The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + GAF_3 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0419620
Simplified PFAM architecture for HKOC_0419620
PFAM domain coverage: 597 / 894 aa (66.8%)
1 aa894 aa
KdpDDUF4118GAF_3HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + GAF_3 + HisKA + HATPase_c
- Raw architecture: KdpD[23-231] | DUF4118[397-503] | GAF_3[525-626] | HisKA[666-733] | HATPase_c[778-888]
- Domain count: 5
- Matched identifier: HKOC_0419620
- Positioned domains: KdpD 23-231 ; DUF4118 397-503 ; GAF_3 525-626 ; HisKA 666-733 ; HATPase_c 778-888
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS10305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key