1 HisKA#1
206-271 aa · 66 aa · 15.6% of protein
Raw token
HisKA:206:0.000000016:271:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS08085
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000186525
ClassHKTypeClassicLength423 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS08085Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length423 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 423 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa423 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
318-423 aa · 106 aa · 25.1% of protein
Raw token
HATPase_c:318:1.27e-18:423:107:109- Raw architecture: HisKA:206:0.000000016:271:66:64#HATPase_c:318:1.27e-18:423:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636578.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span705752-707690Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_01612RefSeq proteinWP_008788720.1
Context group ID
GCF_000186525::NZ_GL636578.1::G00018Context members
HMPREF9488_RS08080HMPREF9488_RS08085
Partner locus tags
HMPREF9488_RS08080HMPREF9488_RS08085
Partner old locus tags
HMPREF9488_01611HMPREF9488_01612
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008788720.1Primary protein accession used for annex mappings.
UniProt accessionE7GA22Primary UniProt accession resolved in the annex database.
UniProt IDE7GA22_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS08085Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_01612Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636578.1Sequence record reported by the local genomic context database.
Genomic interval706 419-707 690 nt1 272 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span705 752-707 690 ntGCF_000186525::NZ_GL636578.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636578.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636578.1All displayed genes belong to this local TCS context.
Neighborhood span705 752-707 690 nt1 939 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
705 752 nt707 690 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS08080GCF_000186525#HMPREF9488_RS08080
RROmpR
705 752-706 432 nt · Forward (+)
HMPREF9488_RS08085GCF_000186525#HMPREF9488_RS08085
HKClassicCurrent focus
706 419-707 690 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS08085The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2235530
Simplified PFAM architecture for HKOC_2235530
PFAM domain coverage: 166 / 423 aa (39.2%)
1 aa423 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[207-270] | HATPase_c[318-419]
- Domain count: 2
- Matched identifier: HKOC_2235530
- Positioned domains: HisKA 207-270 ; HATPase_c 318-419
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS08085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key