1 Response_reg#1
34-111 aa · 78 aa · 33.1% of protein
Raw token
Response_reg:34:0.000000000000142:111:80:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS07245
Response regulator LytTR family
Coprobacillus cateniformis · GCF_000186525
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS07245Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 236 aa (72.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-229 aa · 93 aa · 39.4% of protein
Raw token
LytTR:137:0.0000000000000015:229:100:98- Raw architecture: Response_reg:34:0.000000000000142:111:80:111#LytTR:137:0.0000000000000015:229:100:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636578.1::G00016
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span538658-540111Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_01444RefSeq proteinWP_008788559.1
Context group ID
GCF_000186525::NZ_GL636578.1::G00016Context members
HMPREF9488_RS07240HMPREF9488_RS07245
Partner locus tags
HMPREF9488_RS07240HMPREF9488_RS07245
Partner old locus tags
HMPREF9488_01443HMPREF9488_01444
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008788559.1Primary protein accession used for annex mappings.
UniProt accessionE7G9K5Primary UniProt accession resolved in the annex database.
UniProt IDE7G9K5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS07245Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_01444Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636578.1Sequence record reported by the local genomic context database.
Genomic interval539 401-540 111 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span538 658-540 111 ntGCF_000186525::NZ_GL636578.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636578.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636578.1All displayed genes belong to this local TCS context.
Neighborhood span538 658-540 111 nt1 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
538 658 nt540 111 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS07240GCF_000186525#HMPREF9488_RS07240
RRunclassified
538 658-539 380 nt · Forward (+)
HMPREF9488_RS07245GCF_000186525#HMPREF9488_RS07245
RRLytTRCurrent focus
539 401-540 111 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS07245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988703
Simplified PFAM architecture for RROC_0988703
PFAM domain coverage: 187 / 236 aa (79.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[16-113] | LytTR[140-228]
- Domain count: 2
- Matched identifier: RROC_0988703
- Positioned domains: Response_reg 16-113 ; Response_reg 16-113 ; LytTR 140-228 ; LytTR 140-228
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS07245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key