1 HisKA#1
108-169 aa · 62 aa · 19.0% of protein
Raw token
HisKA:108:0.000000000000602:169:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS02895
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000186525
ClassHKTypeClassicLength326 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS02895Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length326 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 326 aa (50.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa326 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
215-318 aa · 104 aa · 31.9% of protein
Raw token
HATPase_c:215:6.71e-21:318:108:109- Raw architecture: HisKA:108:0.000000000000602:169:63:64#HATPase_c:215:6.71e-21:318:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636577.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span625510-627163Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_00587RefSeq proteinWP_008787703.1
Context group ID
GCF_000186525::NZ_GL636577.1::G00008Context members
HMPREF9488_RS02890HMPREF9488_RS02895
Partner locus tags
HMPREF9488_RS02890HMPREF9488_RS02895
Partner old locus tags
HMPREF9488_00586HMPREF9488_00587
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008787703.1Primary protein accession used for annex mappings.
UniProt accessionE7G749Primary UniProt accession resolved in the annex database.
UniProt IDE7G749_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS02895Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_00587Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636577.1Sequence record reported by the local genomic context database.
Genomic interval626 183-627 163 nt981 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span625 510-627 163 ntGCF_000186525::NZ_GL636577.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636577.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636577.1All displayed genes belong to this local TCS context.
Neighborhood span625 510-627 163 nt1 654 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
625 510 nt627 163 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS02890GCF_000186525#HMPREF9488_RS02890
RROmpR
625 510-626 196 nt · Forward (+)
HMPREF9488_RS02895GCF_000186525#HMPREF9488_RS02895
HKClassicCurrent focus
626 183-627 163 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS02895The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2862925
Simplified PFAM architecture for HKOC_2862925
PFAM domain coverage: 163 / 326 aa (50.0%)
1 aa326 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[109-169] | HATPase_c[215-316]
- Domain count: 2
- Matched identifier: HKOC_2862925
- Positioned domains: HisKA 109-169 ; HATPase_c 215-316
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS02895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key