1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.0000000000000147:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0177_RS06685
Histidine kinase, Classic
Bifidobacterium longum · GCF_000185665
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000185665#HMPREF0177_RS06685Stable P2CS identifier used across views.
GenomeGCF_000185665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.0000000864:443:120:109- Raw architecture: HisKA_3:215:0.0000000000000147:278:64:68#HATPase_c:325:0.0000000864:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000185665::NZ_GL622629.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span56514-58519Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0177_00655RefSeq proteinWP_008782993.1
Context group ID
GCF_000185665::NZ_GL622629.1::G00008Context members
HMPREF0177_RS06685HMPREF0177_RS06680
Partner locus tags
HMPREF0177_RS06685HMPREF0177_RS06680
Partner old locus tags
HMPREF0177_00655HMPREF0177_00656
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008782993.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0177_RS06685Primary locus identifier stored in the genes table.
Old locus tagHMPREF0177_00655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL622629.1Sequence record reported by the local genomic context database.
Genomic interval56 514-57 866 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span56 514-58 519 ntGCF_000185665::NZ_GL622629.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000185665::NZ_GL622629.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL622629.1All displayed genes belong to this local TCS context.
Neighborhood span56 514-58 519 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 514 nt58 519 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0177_RS06685GCF_000185665#HMPREF0177_RS06685
HKClassicCurrent focus
56 514-57 866 nt · Forward (+)
HMPREF0177_RS06680GCF_000185665#HMPREF0177_RS06680
RRNarL
57 866-58 519 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000185665#HMPREF0177_RS06685The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1962191
Simplified PFAM architecture for HKOC_1962191
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1962191
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_000185665#HMPREF0177_RS06685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_000185665
AssemblyASM18566v1 · Scaffoldhaploid
Genome composition2 405 990 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key