1 Response_reg#1
8-118 aa · 111 aa · 25.2% of protein
Raw token
Response_reg:8:2.38e-38:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECJG_RS02080
Response regulator NtrC family
Escherichia coli M718 · GCF_000176575
ClassRRTypeNtrCLength441 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000176575#ECJG_RS02080Stable P2CS identifier used across views.
GenomeGCF_000176575Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5HTH_8
Protein length441 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage268 / 441 aa (60.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5,1 HTH_8Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa441 aa
Domain-by-domain annotation3 items
2 AAA_5#2
165-283 aa · 119 aa · 27.0% of protein
Raw token
AAA_5:165:0.000000021:283:124:1353 HTH_8#3
404-441 aa · 38 aa · 8.6% of protein
Raw token
HTH_8:404:0.0000000000000186:441:38:40- Raw architecture: Response_reg:8:2.38e-38:118:111:111#AAA_5:165:0.000000021:283:124:135#HTH_8:404:0.0000000000000186:441:38:40
- Domain description: 1 Response_reg,1 AAA_5,1 HTH_8
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000176575::NZ_GL884140.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30567-33265Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECJG_05305RefSeq proteinWP_000148497.1
Context group ID
GCF_000176575::NZ_GL884140.1::G00037Context members
ECJG_RS02085ECJG_RS02080
Partner locus tags
ECJG_RS02085ECJG_RS02080
Partner old locus tags
ECJG_05304ECJG_05305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000148497.1Primary protein accession used for annex mappings.
UniProt accessionA0A0L6XTM7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0L6XTM7_ECOLXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECJG_RS02080Primary locus identifier stored in the genes table.
Old locus tagECJG_05305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL884140.1Sequence record reported by the local genomic context database.
Genomic interval31 940-33 265 nt1 326 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 567-33 265 ntGCF_000176575::NZ_GL884140.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000176575::NZ_GL884140.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL884140.1All displayed genes belong to this local TCS context.
Neighborhood span30 567-33 265 nt2 699 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 567 nt33 265 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECJG_RS02085GCF_000176575#ECJG_RS02085
HKClassic
30 567-31 943 nt · Forward (+)
ECJG_RS02080GCF_000176575#ECJG_RS02080
RRNtrCCurrent focus
31 940-33 265 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000176575#ECJG_RS02080The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0329783
Simplified PFAM architecture for RROC_0329783
PFAM domain coverage: 392 / 441 aa (88.9%)
1 aa441 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[8-117] | Sigma54_activat[141-308] | AAA_lid_14[313-388] | HTH_8[403-440]
- Domain count: 4
- Matched identifier: RROC_0329783
- Positioned domains: Response_reg 8-117 ; Response_reg 8-117 ; Sigma54_activat 141-308 ; Sigma54_activat 141-308 ; AAA_lid_14 313-388 ; AAA_lid_14 313-388 ; HTH_8 403-440 ; HTH_8 403-440
Cluster members and taxonomy
Representative gene: GCF_000176575#ECJG_RS02080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 656 419 · GCF_000176575
AssemblyASM17657v2 · Scaffoldhaploid
Genome composition5 413 197 bp · 50,5% GCEscherichia coli M718
Signal transduction countsGenes 66 · HK 32 · RR 34CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key