1 HisKA#1
91-152 aa · 62 aa · 20.1% of protein
Raw token
HisKA:91:0.000000171:152:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0347_RS21350
Histidine kinase, Classic
Enterococcus faecalis TUSoD Ef11 · GCF_000175015
ClassHKTypeClassicLength308 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000175015#HMPREF0347_RS21350Stable P2CS identifier used across views.
GenomeGCF_000175015Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length308 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 308 aa (54.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa308 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-304 aa · 105 aa · 34.1% of protein
Raw token
HATPase_c:200:1.74e-30:304:105:109- Raw architecture: HisKA:91:0.000000171:152:62:64#HATPase_c:200:1.74e-30:304:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000175015::NZ_ACOX02000009.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span429358-430983Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0347_6108RefSeq proteinWP_002389574.1
Context group ID
GCF_000175015::NZ_ACOX02000009.1::G00002Context members
HMPREF0347_RS21350HMPREF0347_RS21355
Partner locus tags
HMPREF0347_RS21350HMPREF0347_RS21355
Partner old locus tags
HMPREF0347_6108HMPREF0347_6109
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002389574.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0347_RS21350Primary locus identifier stored in the genes table.
Old locus tagHMPREF0347_6108Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ACOX02000009.1Sequence record reported by the local genomic context database.
Genomic interval429 358-430 284 nt927 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span429 358-430 983 ntGCF_000175015::NZ_ACOX02000009.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000175015::NZ_ACOX02000009.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ACOX02000009.1All displayed genes belong to this local TCS context.
Neighborhood span429 358-430 983 nt1 626 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
429 358 nt430 983 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0347_RS21350GCF_000175015#HMPREF0347_RS21350
HKClassicCurrent focus
429 358-430 284 nt · Reverse (-)
HMPREF0347_RS21355GCF_000175015#HMPREF0347_RS21355
RROmpR
430 288-430 983 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000175015#HMPREF0347_RS21350The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2879929
Simplified PFAM architecture for HKOC_2879929
PFAM domain coverage: 170 / 308 aa (55.2%)
1 aa308 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[90-152] | HATPase_c[200-306]
- Domain count: 2
- Matched identifier: HKOC_2879929
- Positioned domains: HisKA 90-152 ; HATPase_c 200-306
Cluster members and taxonomy
Representative gene: GCF_000175015#HMPREF0347_RS21350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 553 209 · GCF_000175015
AssemblyASM17501v1 · Contighaploid
Genome composition2 836 650 bp · 37,5% GCEnterococcus faecalis TUSoD Ef11
Signal transduction countsGenes 33 · HK 16 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key