1 HAMP#1
195-266 aa · 72 aa · 14.3% of protein
Raw token
HAMP:195:0.00000000000698:266:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0347_RS09840
Histidine kinase, Classic
Enterococcus faecalis TUSoD Ef11 · GCF_000175015
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000175015#HMPREF0347_RS09840Stable P2CS identifier used across views.
GenomeGCF_000175015Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 502 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-336 aa · 67 aa · 13.3% of protein
Raw token
HisKA:270:0.00000000000000835:336:67:643 HATPase_c#3
384-493 aa · 110 aa · 21.9% of protein
Raw token
HATPase_c:384:1.06e-29:493:110:109- Raw architecture: HAMP:195:0.00000000000698:266:72:69#HisKA:270:0.00000000000000835:336:67:64#HATPase_c:384:1.06e-29:493:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000175015::NZ_ACOX02000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span288649-290854Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0347_5341RefSeq proteinWP_002388912.1
Context group ID
GCF_000175015::NZ_ACOX02000001.1::G00016Context members
HMPREF0347_RS09840HMPREF0347_RS09845
Partner locus tags
HMPREF0347_RS09840HMPREF0347_RS09845
Partner old locus tags
HMPREF0347_5341HMPREF0347_5342
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002388912.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0347_RS09840Primary locus identifier stored in the genes table.
Old locus tagHMPREF0347_5341Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ACOX02000001.1Sequence record reported by the local genomic context database.
Genomic interval288 649-290 157 nt1 509 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span288 649-290 854 ntGCF_000175015::NZ_ACOX02000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000175015::NZ_ACOX02000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ACOX02000001.1All displayed genes belong to this local TCS context.
Neighborhood span288 649-290 854 nt2 206 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
288 649 nt290 854 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0347_RS09840GCF_000175015#HMPREF0347_RS09840
HKClassicCurrent focus
288 649-290 157 nt · Reverse (-)
HMPREF0347_RS09845GCF_000175015#HMPREF0347_RS09845
RROmpR
290 168-290 854 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148165#HMPREF9495_RS10910Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1463908
Simplified PFAM architecture for HKOC_1463908
PFAM domain coverage: 372 / 502 aa (74.1%)
1 aa502 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[45-189] | HAMP[213-265] | HisKA[271-336] | HATPase_c[385-492]
- Domain count: 4
- Matched identifier: HKOC_1463908
- Positioned domains: ArlS_N 45-189 ; HAMP 213-265 ; HisKA 271-336 ; HATPase_c 385-492
Cluster members and taxonomy
Representative gene: GCF_000148165#HMPREF9495_RS10910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 553 209 · GCF_000175015
AssemblyASM17501v1 · Contighaploid
Genome composition2 836 650 bp · 37,5% GCEnterococcus faecalis TUSoD Ef11
Signal transduction countsGenes 33 · HK 16 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key