1 Response_reg#1
38-148 aa · 111 aa · 43.9% of protein
Raw token
Response_reg:38:5.45e-30:148:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BIFCAT_RS04395
Response regulator, AmiR_NasR family
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 · GCF_000173455
ClassRRTypeAmiR_NasRLength253 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000173455#BIFCAT_RS04395Stable P2CS identifier used across views.
GenomeGCF_000173455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 253 aa (63.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 ANTAR#2
191-239 aa · 49 aa · 19.4% of protein
Raw token
ANTAR:191:6.03e-16:239:49:49- Raw architecture: Response_reg:38:5.45e-30:148:112:111#ANTAR:191:6.03e-16:239:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000173455::NZ_ABXY01000011.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span614411-615172Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBIFCAT_01028RefSeq proteinWP_003835216.1
Context group ID
GCF_000173455::NZ_ABXY01000011.1::G00007Context members
BIFCAT_RS04395
Partner locus tags
BIFCAT_RS04395
Partner old locus tags
BIFCAT_01028
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003835216.1Primary protein accession used for annex mappings.
UniProt accessionB6XTY0Primary UniProt accession resolved in the annex database.
UniProt IDB6XTY0_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBIFCAT_RS04395Primary locus identifier stored in the genes table.
Old locus tagBIFCAT_01028Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABXY01000011.1Sequence record reported by the local genomic context database.
Genomic interval614 411-615 172 nt762 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span614 411-615 172 ntGCF_000173455::NZ_ABXY01000011.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173455::NZ_ABXY01000011.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABXY01000011.1All displayed genes belong to this local TCS context.
Neighborhood span614 411-615 172 nt762 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
614 411 nt615 172 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BIFCAT_RS04395GCF_000173455#BIFCAT_RS04395
RRAmiR_NasRCurrent focus
614 411-615 172 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173455#BIFCAT_RS04395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0695395
Simplified PFAM architecture for RROC_0695395
PFAM domain coverage: 163 / 253 aa (64.4%)
1 aa253 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[38-147] | ANTAR[187-239]
- Domain count: 2
- Matched identifier: RROC_0695395
- Positioned domains: Response_reg 38-147 ; Response_reg 38-147 ; ANTAR 187-239 ; ANTAR 187-239
Cluster members and taxonomy
Representative gene: GCF_000173455#BIFCAT_RS04395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 552 · GCF_000173455
AssemblyASM17345v1 · Contighaploid
Genome composition2 058 429 bp · 56,0% GCBifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key