1 Response_reg#1
13-126 aa · 114 aa · 52.3% of protein
Raw token
Response_reg:13:8.31e-16:126:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BIFCAT_RS00315
Response regulator NarL family
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 · GCF_000173455
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000173455#BIFCAT_RS00315Stable P2CS identifier used across views.
GenomeGCF_000173455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 218 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-211 aa · 57 aa · 26.1% of protein
Raw token
HTH_LUXR:155:8.25e-18:211:57:58- Raw architecture: Response_reg:13:8.31e-16:126:115:111#HTH_LUXR:155:8.25e-18:211:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000173455::NZ_ABXY01000001.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span81555-82211Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBIFCAT_00084RefSeq proteinWP_003833623.1
Context group ID
GCF_000173455::NZ_ABXY01000001.1::G00010Context members
BIFCAT_RS00315
Partner locus tags
BIFCAT_RS00315
Partner old locus tags
BIFCAT_00084
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003833623.1Primary protein accession used for annex mappings.
UniProt accessionB6XS79Primary UniProt accession resolved in the annex database.
UniProt IDB6XS79_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBIFCAT_RS00315Primary locus identifier stored in the genes table.
Old locus tagBIFCAT_00084Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABXY01000001.1Sequence record reported by the local genomic context database.
Genomic interval81 555-82 211 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 555-82 211 ntGCF_000173455::NZ_ABXY01000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173455::NZ_ABXY01000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABXY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span81 555-82 211 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 555 nt82 211 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BIFCAT_RS00315GCF_000173455#BIFCAT_RS00315
RRNarLCurrent focus
81 555-82 211 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173455#BIFCAT_RS00315The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1812385
Simplified PFAM architecture for RROC_1812385
PFAM domain coverage: 167 / 218 aa (76.6%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[13-125] | GerE[157-210]
- Domain count: 2
- Matched identifier: RROC_1812385
- Positioned domains: Response_reg 13-125 ; Response_reg 13-125 ; GerE 157-210 ; GerE 157-210
Cluster members and taxonomy
Representative gene: GCF_000173455#BIFCAT_RS00315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 552 · GCF_000173455
AssemblyASM17345v1 · Contighaploid
Genome composition2 058 429 bp · 56,0% GCBifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key