1 HisKA_3#1
216-280 aa · 65 aa · 14.5% of protein
Raw token
HisKA_3:216:0.00000000000000634:280:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BIFPSEUDO_RS02850
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 · GCF_000173435
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000173435#BIFPSEUDO_RS02850Stable P2CS identifier used across views.
GenomeGCF_000173435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 449 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
326-435 aa · 110 aa · 24.5% of protein
Raw token
HATPase_c:326:0.0000000365:435:112:109- Raw architecture: HisKA_3:216:0.00000000000000634:280:65:68#HATPase_c:326:0.0000000365:435:112:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000173435::NZ_ABXX02000002.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58792-60800Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBIFPSEUDO_02957RefSeq proteinWP_033524131.1
Context group ID
GCF_000173435::NZ_ABXX02000002.1::G00010Context members
BIFPSEUDO_RS02845BIFPSEUDO_RS02850
Partner locus tags
BIFPSEUDO_RS02845BIFPSEUDO_RS02850
Partner old locus tags
BIFPSEUDO_02956BIFPSEUDO_02957
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033524131.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD4W976Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD4W976_BIFPSDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBIFPSEUDO_RS02850Primary locus identifier stored in the genes table.
Old locus tagBIFPSEUDO_02957Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABXX02000002.1Sequence record reported by the local genomic context database.
Genomic interval59 451-60 800 nt1 350 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span58 792-60 800 ntGCF_000173435::NZ_ABXX02000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173435::NZ_ABXX02000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABXX02000002.1All displayed genes belong to this local TCS context.
Neighborhood span58 792-60 800 nt2 009 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 792 nt60 800 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BIFPSEUDO_RS02845GCF_000173435#BIFPSEUDO_RS02845
RRNarL
58 792-59 451 nt · Reverse (-)
BIFPSEUDO_RS02850GCF_000173435#BIFPSEUDO_RS02850
HKClassicCurrent focus
59 451-60 800 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173435#BIFPSEUDO_RS02850The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1973364
Simplified PFAM architecture for HKOC_1973364
PFAM domain coverage: 66 / 449 aa (14.7%)
1 aa449 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[216-281]
- Domain count: 1
- Matched identifier: HKOC_1973364
- Positioned domains: HisKA_3 216-281
Cluster members and taxonomy
Representative gene: GCF_000173435#BIFPSEUDO_RS02850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 547 043 · GCF_000173435
AssemblyASM17343v1 · Contighaploid
Genome composition2 304 808 bp · 56,5% GCBifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505
Signal transduction countsGenes 28 · HK 11 · RR 14CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key