1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:6.1e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECH7EC4401_RS19350
Response regulator OmpR family
Escherichia coli O157:H7 str. EC4401 · GCF_000171975
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000171975#ECH7EC4401_RS19350Stable P2CS identifier used across views.
GenomeGCF_000171975Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 225 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:148:2.01e-26:223:76:77- Raw architecture: Response_reg:4:6.1e-39:113:111:111#Trans_reg_C:148:2.01e-26:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000171975::NZ_ABHR01000023.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12581-15939Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECH7EC4401_3241RefSeq proteinWP_000186104.1
Context group ID
GCF_000171975::NZ_ABHR01000023.1::G00013Context members
ECH7EC4401_RS19350ECH7EC4401_RS19355
Partner locus tags
ECH7EC4401_RS19350ECH7EC4401_RS19355
Partner old locus tags
ECH7EC4401_3241ECH7EC4401_3242
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000186104.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3HDI5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3HDI5_ECOLXDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECH7EC4401_RS19350Primary locus identifier stored in the genes table.
Old locus tagECH7EC4401_3241Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABHR01000023.1Sequence record reported by the local genomic context database.
Genomic interval12 581-13 258 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 581-15 939 ntGCF_000171975::NZ_ABHR01000023.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000171975::NZ_ABHR01000023.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABHR01000023.1All displayed genes belong to this local TCS context.
Neighborhood span12 581-15 939 nt3 359 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 581 nt15 939 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECH7EC4401_RS19350GCF_000171975#ECH7EC4401_RS19350
RROmpRCurrent focus
12 581-13 258 nt · Reverse (-)
ECH7EC4401_RS19355GCF_000171975#ECH7EC4401_RS19355
HKClassic
13 255-15 939 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006665#Z_RS03720Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1462547
Simplified PFAM architecture for RROC_1462547
PFAM domain coverage: 185 / 225 aa (82.2%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1462547
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000006665#Z_RS03720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 478 004 · GCF_000171975
AssemblyASM17197v1 · Contighaploid
Genome composition5 733 133 bp · 50,5% GCEscherichia coli O157:H7 str. EC4401
Signal transduction countsGenes 60 · HK 28 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key