1 Response_reg#1
4-116 aa · 113 aa · 54.1% of protein
Raw token
Response_reg:4:8.48e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECH7EC4401_RS18145
Response regulator, unclassified
Escherichia coli O157:H7 str. EC4401 · GCF_000171975
ClassRRTypeunclassifiedLength209 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000171975#ECH7EC4401_RS18145Stable P2CS identifier used across views.
GenomeGCF_000171975Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 209 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 GerE#2
144-200 aa · 57 aa · 27.3% of protein
Raw token
GerE:144:9.06e-22:200:57:57- Raw architecture: Response_reg:4:8.48e-28:116:113:111#GerE:144:9.06e-22:200:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000171975::NZ_ABHR01000020.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5719-7889Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECH7EC4401_1636RefSeq proteinWP_000621912.1
Context group ID
GCF_000171975::NZ_ABHR01000020.1::G00014Context members
ECH7EC4401_RS18140ECH7EC4401_RS18145
Partner locus tags
ECH7EC4401_RS18140ECH7EC4401_RS18145
Partner old locus tags
ECH7EC4401_1635ECH7EC4401_1636
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000621912.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECH7EC4401_RS18145Primary locus identifier stored in the genes table.
Old locus tagECH7EC4401_1636Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABHR01000020.1Sequence record reported by the local genomic context database.
Genomic interval7 260-7 889 nt630 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 719-7 889 ntGCF_000171975::NZ_ABHR01000020.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000171975::NZ_ABHR01000020.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABHR01000020.1All displayed genes belong to this local TCS context.
Neighborhood span5 719-7 889 nt2 171 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 719 nt7 889 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECH7EC4401_RS18140GCF_000171975#ECH7EC4401_RS18140
HKClassic
5 719-7 260 nt · Reverse (-)
ECH7EC4401_RS18145GCF_000171975#ECH7EC4401_RS18145
RRunclassifiedCurrent focus
7 260-7 889 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021125#ECH74115_RS02695Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2041189
Simplified PFAM architecture for RROC_2041189
PFAM domain coverage: 169 / 209 aa (80.9%)
1 aa209 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[145-200]
- Domain count: 2
- Matched identifier: RROC_2041189
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 145-200 ; GerE 145-200
Cluster members and taxonomy
Representative gene: GCF_000021125#ECH74115_RS02695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 478 004 · GCF_000171975
AssemblyASM17197v1 · Contighaploid
Genome composition5 733 133 bp · 50,5% GCEscherichia coli O157:H7 str. EC4401
Signal transduction countsGenes 60 · HK 28 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key