1 HAMP#1
293-360 aa · 68 aa · 9.0% of protein
Raw token
HAMP:293:0.000000000041:360:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECH7EC4401_RS10380
Histidine kinase, Hybrid
Escherichia coli O157:H7 str. EC4401 · GCF_000171975
ClassHKTypeHybridLength756 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000171975#ECH7EC4401_RS10380Stable P2CS identifier used across views.
GenomeGCF_000171975Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_cResponse_reg
Protein length756 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage357 / 756 aa (47.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa756 aa
Domain-by-domain annotation4 items
2 HisKA#2
400-461 aa · 62 aa · 8.2% of protein
Raw token
HisKA:400:0.000000427:461:63:643 HATPase_c#3
504-620 aa · 117 aa · 15.5% of protein
Raw token
HATPase_c:504:2.63e-25:620:118:1094 Response_reg#4
643-752 aa · 110 aa · 14.6% of protein
Raw token
Response_reg:643:0.00000000000151:752:119:111- Raw architecture: HAMP:293:0.000000000041:360:68:69#HisKA:400:0.000000427:461:63:64#HATPase_c:504:2.63e-25:620:118:109#Response_reg:643:0.00000000000151:752:119:111
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000171975::NZ_ABHR01000007.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span117345-119615Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECH7EC4401_5826RefSeq proteinWP_000940958.1
Context group ID
GCF_000171975::NZ_ABHR01000007.1::G00024Context members
ECH7EC4401_RS10380
Partner locus tags
ECH7EC4401_RS10380
Partner old locus tags
ECH7EC4401_5826
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000940958.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3HYJ8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3HYJ8_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECH7EC4401_RS10380Primary locus identifier stored in the genes table.
Old locus tagECH7EC4401_5826Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABHR01000007.1Sequence record reported by the local genomic context database.
Genomic interval117 345-119 615 nt2 271 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span117 345-119 615 ntGCF_000171975::NZ_ABHR01000007.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000171975::NZ_ABHR01000007.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABHR01000007.1All displayed genes belong to this local TCS context.
Neighborhood span117 345-119 615 nt2 271 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 345 nt119 615 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ECH7EC4401_RS10380GCF_000171975#ECH7EC4401_RS10380
HKHybridCurrent focus
117 345-119 615 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006665#Z_RS26625Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0653502
Simplified PFAM architecture for HKOC_0653502
PFAM domain coverage: 335 / 756 aa (44.3%)
1 aa756 aa
HAMPHisKAHATPase_cResponse_reg
- Simplified architecture: HAMP + HisKA + HATPase_c + Response_reg
- Raw architecture: HAMP[312-360] | HisKA[402-461] | HATPase_c[504-619] | Response_reg[643-752]
- Domain count: 4
- Matched identifier: HKOC_0653502
- Positioned domains: HAMP 312-360 ; HisKA 402-461 ; HATPase_c 504-619 ; Response_reg 643-752
Cluster members and taxonomy
Representative gene: GCF_000006665#Z_RS26625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 478 004 · GCF_000171975
AssemblyASM17197v1 · Contighaploid
Genome composition5 733 133 bp · 50,5% GCEscherichia coli O157:H7 str. EC4401
Signal transduction countsGenes 60 · HK 28 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key