1 Response_reg#1
5-116 aa · 112 aa · 47.7% of protein
Raw token
Response_reg:5:7.1e-29:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECH7EC4401_RS10345
Response regulator OmpR family
Escherichia coli O157:H7 str. EC4401 · GCF_000171975
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000171975#ECH7EC4401_RS10345Stable P2CS identifier used across views.
GenomeGCF_000171975Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-230 aa · 74 aa · 31.5% of protein
Raw token
Trans_reg_C:157:2.55e-27:230:74:77- Raw architecture: Response_reg:5:7.1e-29:116:113:111#Trans_reg_C:157:2.55e-27:230:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000171975::NZ_ABHR01000007.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span110465-111172Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECH7EC4401_5819RefSeq proteinWP_000805929.1
Context group ID
GCF_000171975::NZ_ABHR01000007.1::G00023Context members
ECH7EC4401_RS10345
Partner locus tags
ECH7EC4401_RS10345
Partner old locus tags
ECH7EC4401_5819
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000805929.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3H0M3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3H0M3_ECOLXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECH7EC4401_RS10345Primary locus identifier stored in the genes table.
Old locus tagECH7EC4401_5819Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABHR01000007.1Sequence record reported by the local genomic context database.
Genomic interval110 465-111 172 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span110 465-111 172 ntGCF_000171975::NZ_ABHR01000007.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000171975::NZ_ABHR01000007.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABHR01000007.1All displayed genes belong to this local TCS context.
Neighborhood span110 465-111 172 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 465 nt111 172 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ECH7EC4401_RS10345GCF_000171975#ECH7EC4401_RS10345
RROmpRCurrent focus
110 465-111 172 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008865#ECs_5067Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016400
Simplified PFAM architecture for RROC_1016400
PFAM domain coverage: 187 / 235 aa (79.6%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1016400
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000008865#ECs_5067
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 478 004 · GCF_000171975
AssemblyASM17197v1 · Contighaploid
Genome composition5 733 133 bp · 50,5% GCEscherichia coli O157:H7 str. EC4401
Signal transduction countsGenes 60 · HK 28 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key