1 Response_reg#1
9-121 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:9:3.96e-36:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECH7EC4401_RS08830
Response regulator, unclassified
Escherichia coli O157:H7 str. EC4401 · GCF_000171975
ClassRRTypeunclassifiedLength215 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000171975#ECH7EC4401_RS08830Stable P2CS identifier used across views.
GenomeGCF_000171975Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 215 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 GerE#2
152-208 aa · 57 aa · 26.5% of protein
Raw token
GerE:152:1.85e-25:208:57:57- Raw architecture: Response_reg:9:3.96e-36:121:113:111#GerE:152:1.85e-25:208:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000171975::NZ_ABHR01000006.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5681-6328Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECH7EC4401_2008RefSeq proteinWP_001301754.1
Context group ID
GCF_000171975::NZ_ABHR01000006.1::G00027Context members
ECH7EC4401_RS08830
Partner locus tags
ECH7EC4401_RS08830
Partner old locus tags
ECH7EC4401_2008
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001301754.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3H8P1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3H8P1_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECH7EC4401_RS08830Primary locus identifier stored in the genes table.
Old locus tagECH7EC4401_2008Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABHR01000006.1Sequence record reported by the local genomic context database.
Genomic interval5 681-6 328 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 681-6 328 ntGCF_000171975::NZ_ABHR01000006.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000171975::NZ_ABHR01000006.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABHR01000006.1All displayed genes belong to this local TCS context.
Neighborhood span5 681-6 328 nt648 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 681 nt6 328 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ECH7EC4401_RS08830GCF_000171975#ECH7EC4401_RS08830
RRunclassifiedCurrent focus
5 681-6 328 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006665#Z_RS16240Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906483
Simplified PFAM architecture for RROC_1906483
PFAM domain coverage: 169 / 215 aa (78.6%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-121] | GerE[152-207]
- Domain count: 2
- Matched identifier: RROC_1906483
- Positioned domains: Response_reg 9-121 ; Response_reg 9-121 ; GerE 152-207 ; GerE 152-207
Cluster members and taxonomy
Representative gene: GCF_000006665#Z_RS16240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 478 004 · GCF_000171975
AssemblyASM17197v1 · Contighaploid
Genome composition5 733 133 bp · 50,5% GCEscherichia coli O157:H7 str. EC4401
Signal transduction countsGenes 60 · HK 28 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key