1 Response_reg#1
4-117 aa · 114 aa · 32.0% of protein
Raw token
Response_reg:4:6.13e-29:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMGNA_RS16725
Response regulator, unclassified
Mediterraneibacter gnavus ATCC 29149 · GCF_000169475
ClassRRTypeunclassifiedLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000169475#RUMGNA_RS16725Stable P2CS identifier used across views.
GenomeGCF_000169475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage178 / 356 aa (50.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
259-288 aa · 30 aa · 8.4% of protein
Raw token
HTH_AraC:259:0.000000147:288:30:423 HTH_AraC#3
315-348 aa · 34 aa · 9.6% of protein
Raw token
HTH_AraC:315:0.0000562:348:34:42- Raw architecture: Response_reg:4:6.13e-29:117:114:111#HTH_AraC:259:0.000000147:288:30:42#HTH_AraC:315:0.0000562:348:34:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000169475::NZ_AAYG02000034.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16788-19597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMGNA_03827RefSeq proteinWP_039960197.1
Context group ID
GCF_000169475::NZ_AAYG02000034.1::G00002Context members
RUMGNA_RS16720RUMGNA_RS16725
Partner locus tags
RUMGNA_RS16720RUMGNA_RS16725
Partner old locus tags
RUMGNA_03826RUMGNA_03827
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039960197.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1EZF6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1EZF6_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMGNA_RS16725Primary locus identifier stored in the genes table.
Old locus tagRUMGNA_03827Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAYG02000034.1Sequence record reported by the local genomic context database.
Genomic interval18 527-19 597 nt1 071 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 788-19 597 ntGCF_000169475::NZ_AAYG02000034.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169475::NZ_AAYG02000034.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAYG02000034.1All displayed genes belong to this local TCS context.
Neighborhood span16 788-19 597 nt2 810 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 788 nt19 597 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMGNA_RS16720GCF_000169475#RUMGNA_RS16720
HKClassic
16 788-18 539 nt · Forward (+)
RUMGNA_RS16725GCF_000169475#RUMGNA_RS16725
RRunclassifiedCurrent focus
18 527-19 597 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS16725The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0466562
Simplified PFAM architecture for RROC_0466562
PFAM domain coverage: 192 / 356 aa (53.9%)
1 aa356 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[272-350]
- Domain count: 2
- Matched identifier: RROC_0466562
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 272-350 ; HTH_18 272-350
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS16725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_000169475
AssemblyASM16947v1 · Contighaploid
Genome composition3 501 911 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 81 · HK 39 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key